RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 MYO18BQ8IUG5 2567 aa15.15■□□□□ 0.02
SF3A1-204ENST00000447376 BAHCC1Q9P281 2608 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 PRRC2CQ9Y520 2896 aaKnown RBP15.14■□□□□ 0.01
SF3A1-204ENST00000447376 A0A1W2PS29 197 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 ASPDHA6ND91 283 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 TP53I11O14683 189 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 TFECO14948 347 aaPredicted RBP15.14■□□□□ 0.01
SF3A1-204ENST00000447376 CT62P0C5K7 136 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 KITP10721 976 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 PRPS2P11908 318 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 PCSK2P16519 638 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 RPL3P39023 403 aaKnown RBP15.14■□□□□ 0.01
SF3A1-204ENST00000447376 NR0B1P51843 470 aaKnown RBP15.14■□□□□ 0.01
SF3A1-204ENST00000447376 CASP6P55212 293 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 DCAF7P61962 342 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 PLGLB1Q02325 96 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 KRTCAP3Q53RY4 240 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 FAM71E1Q6IPT2 247 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 FAM47EQ6ZV65 393 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 R3HCC1LQ7Z5L2 792 aaKnown RBP15.14■□□□□ 0.01
SF3A1-204ENST00000447376 SULF2Q8IWU5 870 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 FAM13CQ8NE31 585 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 C17orf47Q8NEP4 570 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 ADCY4Q8NFM4 1077 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 ZNF675Q8TD23 568 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 CKAP2Q8WWK9 683 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 SPACA9Q96E40 222 aaPredicted RBP15.14■□□□□ 0.01
SF3A1-204ENST00000447376 PPP1R36Q96LQ0 422 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 FRMD6Q96NE9 622 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 MEAF6Q9HAF1 191 aa15.14■□□□□ 0.01
SF3A1-204ENST00000447376 MARCOQ9UEW3 520 aaPredicted RBP15.14■□□□□ 0.01
SF3A1-204ENST00000447376 SPENQ96T58 3664 aaKnown RBP15.14■□□□□ 0.01
SF3A1-204ENST00000447376 UBR5O95071 2799 aaPredicted RBP15.13■□□□□ 0.01
SF3A1-204ENST00000447376 UNC5CO95185 931 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 BCKDHAP12694 445 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 SDC1P18827 310 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 NCBP2P52298 156 aaKnown RBP eCLIP15.13■□□□□ 0.01
SF3A1-204ENST00000447376 PER3P56645 1201 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 PSPHP78330 225 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 EMX2Q04743 252 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 UBAP2LQ14157 1087 aaKnown RBP15.13■□□□□ 0.01
SF3A1-204ENST00000447376 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.13■□□□□ 0.013e-13■□□□□ 9.3
SF3A1-204ENST00000447376 SLC22A10Q63ZE4 541 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 ZNF324BQ6AW86 544 aaPredicted RBP15.13■□□□□ 0.01
SF3A1-204ENST00000447376 FAM180BQ6P0A1 224 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 FAM111BQ6SJ93 734 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 MDGA2Q7Z553 956 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 WDR75Q8IWA0 830 aaKnown RBP15.13■□□□□ 0.01
SF3A1-204ENST00000447376 CPSF7Q8N684 471 aaKnown RBP15.13■□□□□ 0.01
SF3A1-204ENST00000447376 C16orf52Q8NHV5 167 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 ZFP28Q8NHY6 868 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.13■□□□□ 0.01
SF3A1-204ENST00000447376 MAGED4Q96JG8 741 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 ZNF681Q96N22 645 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 TSSK3Q96PN8 268 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 FAM173AQ9BQD7 235 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 AKTIPQ9H8T0 292 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 NOP53Q9NZM5 478 aaKnown RBP15.13■□□□□ 0.01
SF3A1-204ENST00000447376 MAPRE3Q9UPY8 281 aa15.13■□□□□ 0.01
SF3A1-204ENST00000447376 SHANK1Q9Y566 2161 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 NPIPA5E9PKD4 350 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 PDPK1O15530 556 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 COQ9O75208 318 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 JUNP05412 331 aaKnown RBP15.12■□□□□ 0.01
SF3A1-204ENST00000447376 LBPP18428 481 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 CNR1P21554 472 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 HPCAL1P37235 193 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 GPR85P60893 370 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 MRPS35P82673 323 aaKnown RBP15.12■□□□□ 0.01
SF3A1-204ENST00000447376 EXOSC7Q15024 291 aaKnown RBP15.12■□□□□ 0.01
SF3A1-204ENST00000447376 LTB4RQ15722 352 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 IL23RQ5VWK5 629 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 PAOXQ6QHF9 649 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 RGS9BPQ6ZS82 235 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 ZNF227Q86WZ6 799 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 LIX1Q8N485 282 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 ZNF615Q8N8J6 731 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 OR52R1Q8NGF1 315 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 OR9A2Q8NGT5 310 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 PPCDCQ96CD2 204 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 MTERF3Q96E29 417 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 HSPBAP1Q96EW2 488 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 PRPF18Q99633 342 aaKnown RBP15.12■□□□□ 0.01
SF3A1-204ENST00000447376 C1orf50Q9BV19 199 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 REEP4Q9H6H4 257 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 TAS2R9Q9NYW1 312 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 TAS2R7Q9NYW3 318 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 CNIH4Q9P003 139 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 NPIPA1Q9UND3 350 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 OSGIN2Q9Y236 505 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 NPFFR2Q9Y5X5 522 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 RP1L1Q8IWN7 2480 aaPredicted RBP15.12■□□□□ 0.01
SF3A1-204ENST00000447376 NBASA2RRP1 2371 aa15.12■□□□□ 0.01
SF3A1-204ENST00000447376 TENM4Q6N022 2769 aa15.11■□□□□ 0.01
SF3A1-204ENST00000447376 MYO1GB0I1T2 1018 aa15.11■□□□□ 0.01
SF3A1-204ENST00000447376 ACOX3O15254 700 aa15.11■□□□□ 0.01
SF3A1-204ENST00000447376 TGDSO95455 350 aa15.11■□□□□ 0.01
SF3A1-204ENST00000447376 CLPSP04118 112 aa15.11■□□□□ 0.01
SF3A1-204ENST00000447376 FBXO45P0C2W1 286 aa15.11■□□□□ 0.01
SF3A1-204ENST00000447376 GPX3P22352 226 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms