RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 FUT5Q11128 374 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 MLLT11Q13015 90 aaPredicted RBP11.14□□□□□ -0.63
CD44-209ENST00000433892 CAMK1Q14012 370 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 MLF2Q15773 248 aaPredicted RBP11.14□□□□□ -0.63
CD44-209ENST00000433892 ATAT1Q5SQI0 421 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 PIP5KL1Q5T9C9 394 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 RTL10Q7L3V2 364 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 FAM26EQ8N5C1 309 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 Q8N9G6 341 aaPredicted RBP11.14□□□□□ -0.63
CD44-209ENST00000433892 CREB3L4Q8TEY5 395 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 C12orf66Q96MD2 445 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 ZNF582Q96NG8 517 aaPredicted RBP11.14□□□□□ -0.63
CD44-209ENST00000433892 POLDIP3Q9BY77 421 aaKnown RBP11.14□□□□□ -0.63
CD44-209ENST00000433892 HOXD1Q9GZZ0 328 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 TAS2R7Q9NYW3 318 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 TRAPPC4Q9Y296 219 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 SLC9A8Q9Y2E8 581 aa11.14□□□□□ -0.63
CD44-209ENST00000433892 TRPM6Q9BX84 2022 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 SZT2Q5T011 3432 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 KIAA0100Q14667 2235 aaKnown RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 A0A1W2PS29 197 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 C4orf51C9J302 202 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 CACNB4O00305 520 aaPredicted RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 LRRTM2O43300 516 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 CCNKO75909 580 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 PCDH8O95206 1070 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 FGBP02675 491 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 HMGN2P05204 90 aaKnown RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 C8orf89P0DMQ9 161 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 ACP5P13686 325 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 ALDH6A1Q02252 535 aaKnown RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 RUNX1T1Q06455 604 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 PRDX1Q06830 199 aaKnown RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 COX10Q12887 443 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 MLC1Q15049 377 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 SNAPC1Q16533 368 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 BAK1Q16611 211 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 FLYWCH1Q4VC44 716 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 CCDC116Q8IYX3 515 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 MORN4Q8NDC4 146 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 OR9Q1Q8NGQ5 310 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 OR8K5Q8NH50 307 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 NEDD4LQ96PU5 975 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 INSM2Q96T92 566 aaPredicted RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 CTRCQ99895 268 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 PLA2G12AQ9BZM1 189 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 EGLN3Q9H6Z9 239 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 NT5DC2Q9H857 520 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 IL23AQ9NPF7 189 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 PRSS16Q9NQE7 514 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 MBNL1Q9NR56 388 aaKnown RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 IMP3Q9NV31 184 aaKnown RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 TESQ9UGI8 421 aaKnown RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 ADAM29Q9UKF5 820 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 FBXW2Q9UKT8 454 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 DIMT1Q9UNQ2 313 aaKnown RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 GPR52Q9Y2T5 361 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 YARS2Q9Y2Z4 477 aaKnown RBP11.13□□□□□ -0.63
CD44-209ENST00000433892 DOCK9Q9BZ29 2069 aa11.13□□□□□ -0.63
CD44-209ENST00000433892 C1QTNF3-AMACRE9PGA6 284 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 MAN2B1O00754 1011 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 CLEC3AO75596 197 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 NFATC1O95644 943 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 RAB36O95755 333 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 LGI1O95970 557 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 CLEC2LP0C7M8 214 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 DRD2P14416 443 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 NTSP30990 170 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 RCVRNP35243 200 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 KHKP50053 298 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 OR2B6P58173 313 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 TAS2R38P59533 333 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 PSPHP78330 225 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 DUSP2Q05923 314 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 SLAMF1Q13291 335 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 COL9A2Q14055 689 aaPredicted RBP11.12□□□□□ -0.63
CD44-209ENST00000433892 SF3B4Q15427 424 aaKnown RBP eCLIP11.12□□□□□ -0.63
CD44-209ENST00000433892 ZNF79Q15937 498 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 GPAT3Q53EU6 434 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 FAM78AQ5JUQ0 283 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 OR2G6Q5TZ20 316 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 AGAP6Q5VW22 663 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 RNLSQ5VYX0 342 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 NXNL2Q5VZ03 156 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 C22orf42Q6IC83 251 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 C1orf94Q6P1W5 598 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 CD300LDQ6UXZ3 194 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 KIF18BQ86Y91 864 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 SLC7A5P1Q8MH63 180 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 OR2A1Q8NGT9 310 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 C16orf58Q96GQ5 468 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 ZNF764Q96H86 408 aaPredicted RBP11.12□□□□□ -0.63
CD44-209ENST00000433892 AGAP4Q96P64 663 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 NELL2Q99435 816 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 HDAC8Q9BY41 377 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 RACGAP1Q9H0H5 632 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 TIGARQ9NQ88 270 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 TXNL4BQ9NX01 149 aaKnown RBP11.12□□□□□ -0.63
CD44-209ENST00000433892 ITGB1BP2Q9UKP3 347 aa11.12□□□□□ -0.63
CD44-209ENST00000433892 ATG4BQ9Y4P1 393 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms