RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 HES7Q9BYE0 225 aa13.6□□□□□ -0.23
CHD1-202ENST00000414220 MANSC1Q9H8J5 431 aa13.6□□□□□ -0.23
CHD1-202ENST00000414220 ATAD3AQ9NVI7 634 aa13.6□□□□□ -0.23
CHD1-202ENST00000414220 CNIH4Q9P003 139 aa13.6□□□□□ -0.23
CHD1-202ENST00000414220 CPAMD8Q8IZJ3 1885 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 HMGB1P1B2RPK0 211 aaPredicted RBP13.59□□□□□ -0.23
CHD1-202ENST00000414220 ACOX3O15254 700 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 PDPK1O15530 556 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 AKAP10O43572 662 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 PLOD3O60568 738 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 TBX19O60806 448 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 JUNP05412 331 aaKnown RBP13.59□□□□□ -0.23
CHD1-202ENST00000414220 BCKDHAP12694 445 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 H2AFXP16104 143 aaPredicted RBP13.59□□□□□ -0.23
CHD1-202ENST00000414220 NAGAP17050 411 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 SDC1P18827 310 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 KRT20P35900 424 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 MEOX1P50221 254 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 CASP6P55212 293 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 WDR4P57081 412 aaKnown RBP13.59□□□□□ -0.23
CHD1-202ENST00000414220 PLGLB1Q02325 96 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 MGAT2Q10469 447 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.59□□□□□ -0.23
CHD1-202ENST00000414220 TRMT12Q53H54 448 aaKnown RBP13.59□□□□□ -0.23
CHD1-202ENST00000414220 TBCELQ5QJ74 424 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 C6orf136Q5SQH8 315 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 GFRALQ6UXV0 394 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 BNC2Q6ZN30 1099 aaPredicted RBP13.59□□□□□ -0.23
CHD1-202ENST00000414220 RGS9BPQ6ZS82 235 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 FAM47EQ6ZV65 393 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 LRRC34Q8IZ02 419 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 FAM13CQ8NE31 585 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 DYDC1Q8WWB3 177 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 LCORQ96JN0 433 aaPredicted RBP13.59□□□□□ -0.23
CHD1-202ENST00000414220 EGLN2Q96KS0 407 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 FAM173AQ9BQD7 235 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 NOP53Q9NZM5 478 aaKnown RBP13.59□□□□□ -0.23
CHD1-202ENST00000414220 ZNF639Q9UID6 485 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 NPFFR2Q9Y5X5 522 aa13.59□□□□□ -0.23
CHD1-202ENST00000414220 A0A087WV62 115 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 TRPC5OSA6NMA1 111 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 TFECO14948 347 aaPredicted RBP13.58□□□□□ -0.24
CHD1-202ENST00000414220 LRATO95237 230 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 CLPSP04118 112 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 FBXO45P0C2W1 286 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 PRPS1L1P21108 318 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 S1PR1P21453 382 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 DRD5P21918 477 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 GPX3P22352 226 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 TACR1P25103 407 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 ARRB2P32121 409 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 PPICP45877 212 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 MANFP55145 182 aaKnown RBP13.58□□□□□ -0.24
CHD1-202ENST00000414220 MRPS35P82673 323 aaKnown RBP13.58□□□□□ -0.24
CHD1-202ENST00000414220 PMP22Q01453 160 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 EMX2Q04743 252 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 EXOSC7Q15024 291 aaKnown RBP13.58□□□□□ -0.24
CHD1-202ENST00000414220 ZNHIT3Q15649 155 aaPredicted RBP13.58□□□□□ -0.24
CHD1-202ENST00000414220 LTB4RQ15722 352 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 EIF2S3LQ2VIR3 472 aaKnown RBP13.58□□□□□ -0.24
CHD1-202ENST00000414220 IL23RQ5VWK5 629 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 ZNF324BQ6AW86 544 aaPredicted RBP13.58□□□□□ -0.24
CHD1-202ENST00000414220 MDGA2Q7Z553 956 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 SLC22A16Q86VW1 577 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 ZNF227Q86WZ6 799 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 LIX1Q8N485 282 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 FAM26EQ8N5C1 309 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 KAT2AQ92830 837 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 ADIPOR1Q96A54 375 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 ARL8AQ96BM9 186 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 FRMD6Q96NE9 622 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 SECISBP2Q96T21 854 aaKnown RBP13.58□□□□□ -0.24
CHD1-202ENST00000414220 DDX18Q9NVP1 670 aaKnown RBP13.58□□□□□ -0.24
CHD1-202ENST00000414220 BAIAP2L1Q9UHR4 511 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 HAO1Q9UJM8 370 aa13.58□□□□□ -0.24
CHD1-202ENST00000414220 MRTO4Q9UKD2 239 aaKnown RBP13.58□□□□□ -0.24
CHD1-202ENST00000414220 TTC36A6NLP5 189 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 NPIPA5E9PKD4 350 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 PLOD2O00469 737 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 AGFG2O95081 481 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 UNC5CO95185 931 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 NADKO95544 446 aaPredicted RBP13.57□□□□□ -0.24
CHD1-202ENST00000414220 CBX7O95931 251 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 IFI6P09912 130 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 UQCRFS1P47985 274 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 KCNJ2P63252 427 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 MRPS22P82650 360 aaKnown RBP13.57□□□□□ -0.24
CHD1-202ENST00000414220 DUSP2Q05923 314 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 PLCXD2Q0VAA5 305 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 MRPL49Q13405 166 aaKnown RBP13.57□□□□□ -0.24
CHD1-202ENST00000414220 RPS6KA2Q15349 733 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 NTRK2Q16620 822 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 ZNF791Q3KP31 576 aaPredicted RBP13.57□□□□□ -0.24
CHD1-202ENST00000414220 CPTPQ5TA50 214 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 NUP54Q7Z3B4 507 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 CPSF7Q8N684 471 aaKnown RBP13.57□□□□□ -0.24
CHD1-202ENST00000414220 ZFP62Q8NB50 900 aaPredicted RBP13.57□□□□□ -0.24
CHD1-202ENST00000414220 CEP70Q8NHQ1 597 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 CLHC1Q8NHS4 586 aa13.57□□□□□ -0.24
CHD1-202ENST00000414220 LRRC8CQ8TDW0 803 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms