RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GLYATL2Q8WU03 294 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 OR1E3Q8WZA6 343 aa12.35□□□□□ -0.43
COL6A3-206ENST00000409809 ANKRD63C9JTQ0 380 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 IRAK2O43187 625 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 NDNFQ8TB73 568 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 MRPS30Q9NP92 439 aaKnown RBP12.34□□□□□ -0.43
COL6A3-206ENST00000409809 KIAA0100Q14667 2235 aaKnown RBP12.34□□□□□ -0.43
COL6A3-206ENST00000409809 S100A11P31949 105 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 CRHR2Q13324 411 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 TRMT10BQ6PF06 316 aaKnown RBP12.34□□□□□ -0.43
COL6A3-206ENST00000409809 SOCS4Q8WXH5 440 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 MOB1AQ9H8S9 216 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 Q9N2J8 555 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 TNS2Q63HR2 1409 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 ZNF587BE7ETH6 402 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 MANBAO00462 879 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 RGS11O94810 467 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 GABRA5P31644 462 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 IRF9Q00978 393 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 B3GLCTQ6Y288 498 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 CFAP77Q6ZQR2 320 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 HFE2Q6ZVN8 426 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 CLIP3Q96DZ5 547 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 GSX2Q9BZM3 304 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 PITHD1Q9GZP4 211 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-206ENST00000409809 ADAP2Q9NPF8 381 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 EGFP01133 1207 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 CDK5R2Q13319 367 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 KLF1Q13351 362 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-206ENST00000409809 ZNF266Q14584 549 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 SLC9B2Q86UD5 537 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 LRR1Q96L50 414 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 RBP7Q96R05 134 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 EXO1Q9UQ84 846 aaKnown RBP12.34□□□□□ -0.43
COL6A3-206ENST00000409809 TMEM127O75204 238 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 SYPP08247 313 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 FGF3P11487 239 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-206ENST00000409809 MAP4K2Q12851 820 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 STK11Q15831 433 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 NDUFAF7Q7L592 441 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 ZFAND4Q86XD8 727 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 TBX5Q99593 518 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 DTLQ9NZJ0 730 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 SLC16A5O15375 505 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 TAGLN2P37802 199 aaKnown RBP12.34□□□□□ -0.43
COL6A3-206ENST00000409809 PLA2G7Q13093 441 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 MFSD13AQ14CX5 517 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 C2orf76Q3KRA6 126 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 OR10K1Q8NGX5 313 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 ARNTL2Q8WYA1 636 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 MUL1Q969V5 352 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 OCSTAMPQ9BR26 566 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 SPATC1LQ9H0A9 340 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 CWH43Q9H720 699 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 HMX1Q9NP08 348 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-206ENST00000409809 C1QBP02746 253 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 AHCYP23526 432 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 RIN1Q13671 783 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 DCAF12L1Q5VU92 463 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 C17orf62Q9BQA9 187 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 SAP130Q9H0E3 1048 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 FBXW11Q9UKB1 542 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 ETV7Q9Y603 341 aa12.34□□□□□ -0.43
COL6A3-206ENST00000409809 EIF3FO00303 357 aaPredicted RBP12.33□□□□□ -0.43
COL6A3-206ENST00000409809 ARHGAP33O14559 1287 aa12.33□□□□□ -0.43
COL6A3-206ENST00000409809 ZNF704Q6ZNC4 412 aaPredicted RBP12.33□□□□□ -0.43
COL6A3-206ENST00000409809 PLEKHH3Q7Z736 793 aa12.33□□□□□ -0.43
COL6A3-206ENST00000409809 OR51G2Q8NGK0 314 aa12.33□□□□□ -0.43
COL6A3-206ENST00000409809 TMEM234Q8WY98 164 aa12.33□□□□□ -0.43
COL6A3-206ENST00000409809 MARC2Q969Z3 335 aa12.33□□□□□ -0.43
COL6A3-206ENST00000409809 SCML2Q9UQR0 700 aa12.33□□□□□ -0.43
COL6A3-206ENST00000409809 GPSM3Q9Y4H4 160 aa12.33□□□□□ -0.43
COL6A3-206ENST00000409809 MROH1Q8NDA8 1641 aa12.33□□□□□ -0.43
COL6A3-206ENST00000409809 MT-ND4LP03901 98 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 SPATA31D3P0C874 917 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 CKMT1AP12532 417 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 NDUFV2P19404 249 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 UFM1P61960 85 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 SLC17A1Q14916 467 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 PAN3Q58A45 887 aaKnown RBP12.33□□□□□ -0.44
COL6A3-206ENST00000409809 BRAT1Q6PJG6 821 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 SPATA31D4Q6ZUB0 917 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 CLEC10AQ8IUN9 316 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 PHYHIPQ92561 330 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 SLC28A3Q9HAS3 691 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 GMPR2Q9P2T1 348 aaKnown RBP12.33□□□□□ -0.44
COL6A3-206ENST00000409809 HYKKA2RU49 373 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 CD48P09326 243 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 G6PDP11413 515 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 BRCC3P46736 316 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 PPP1R3AQ16821 1122 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 SLC51AQ86UW1 340 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 CAMKVQ8NCB2 501 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 ACDQ96AP0 544 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 SCML1Q9UN30 329 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 SHMT1P34896 483 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 VSIG10LQ86VR7 867 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 TRIB2Q92519 343 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 ZDHHC5Q9C0B5 715 aa12.33□□□□□ -0.44
COL6A3-206ENST00000409809 OSBPL2Q9H1P3 480 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms