RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 FAM199XQ6PEV8 388 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-204ENST00000409441 ZNF621Q6ZSS3 439 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 USP51Q70EK9 711 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 NUDT13Q86X67 352 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 ZZZ3Q8IYH5 903 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 FAM86B1Q8N7N1 296 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 OR5K1Q8NHB7 308 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 CYGBQ8WWM9 190 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 MR1Q95460 341 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 MTERF3Q96E29 417 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 DPH2Q9BQC3 489 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-204ENST00000409441 YIPF2Q9BWQ6 316 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 NPLQ9BXD5 320 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-204ENST00000409441 REEP4Q9H6H4 257 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 SLC22A11Q9NSA0 550 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 ATAD3AQ9NVI7 634 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 ZNF282Q9UDV7 671 aaPredicted RBP12.61□□□□□ -0.39
LIMS1-204ENST00000409441 RPS6KA6Q9UK32 745 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 COMMD3-BMI1R4GMX3 469 aa12.61□□□□□ -0.39
LIMS1-204ENST00000409441 A0A087WXM4 84 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 A0A0A6YYD5 115 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 GNG14A0A1W2PPG7 69 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 GABRR3A8MPY1 467 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 G3V2T6 193 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 STMND1H3BQB6 276 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 TMPRSS11DO60235 418 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 BMP10O95393 424 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 CPSF4O95639 269 aaKnown RBP12.6□□□□□ -0.39
LIMS1-204ENST00000409441 ALPLP05186 524 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 ABCB1P08183 1280 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-204ENST00000409441 THRBP10828 461 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 ATP6V1B1P15313 513 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 CD82P27701 267 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 TPP2P29144 1249 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-204ENST00000409441 MAGEA2P43356 314 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 MAT1AQ00266 395 aaKnown RBP12.6□□□□□ -0.39
LIMS1-204ENST00000409441 VEZF1Q14119 521 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 DSG2Q14126 1118 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 SLC9A5Q14940 896 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 SYT16Q17RD7 645 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 NADK2Q4G0N4 442 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 TTC33Q6PID6 262 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-204ENST00000409441 TBPL2Q6SJ96 375 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 ZNF517Q6ZMY9 492 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-204ENST00000409441 SHISA5Q8N114 240 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 C10orf111Q8N326 155 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 METTL25Q8N6Q8 603 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 TRIML2Q8N7C3 387 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 OR51Q1Q8NH59 317 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 GOT1L1Q8NHS2 421 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-204ENST00000409441 CDC26Q8NHZ8 85 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.6□□□□□ -0.39
LIMS1-204ENST00000409441 ZNF578Q96N58 590 aaPredicted RBP12.6□□□□□ -0.39
LIMS1-204ENST00000409441 GRIP2Q9C0E4 1043 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 CHST8Q9H2A9 424 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 MYNNQ9NPC7 610 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 KCMF1Q9P0J7 381 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 HCN3Q9P1Z3 774 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 TRPC4Q9UBN4 977 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 VPS4AQ9UN37 437 aa12.6□□□□□ -0.39
LIMS1-204ENST00000409441 GNGT2O14610 69 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 FBLP22087 321 aaKnown RBP12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ALDH3B2P48448 385 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 MAPK12P53778 367 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 LIM2P55344 173 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 PDE7AQ13946 482 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ARHGAP40Q5TG30 622 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 IKBIPQ70UQ0 350 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 OVCH1Q7RTY7 1134 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ZNF551Q7Z340 670 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-204ENST00000409441 STK32CQ86UX6 486 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ALDH16A1Q8IZ83 802 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 CLECL1Q8IZS7 167 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 NLGN4XQ8N0W4 816 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 CLEC4FQ8N1N0 589 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 CA13Q8N1Q1 262 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ESX1Q8N693 406 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 NLGN4YQ8NFZ3 816 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ZFAND2BQ8WV99 257 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 RBM4BQ9BQ04 359 aaKnown RBP12.59□□□□□ -0.39
LIMS1-204ENST00000409441 RBM4Q9BWF3 364 aaKnown RBP12.59□□□□□ -0.39
LIMS1-204ENST00000409441 OSBPL10Q9BXB5 764 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 RBM38Q9H0Z9 239 aaKnown RBP12.59□□□□□ -0.39
LIMS1-204ENST00000409441 LYRM4Q9HD34 91 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 IFT80Q9P2H3 777 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-204ENST00000409441 FBXW2Q9UKT8 454 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ACSL6Q9UKU0 697 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 DAPP1Q9UN19 280 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 MAP4K5Q9Y4K4 846 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 ASB4Q9Y574 426 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 SEC16AO15027 2179 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 SCN3AQ9NY46 2000 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 MYOCOSA0A1B0GUC4 107 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 C1orf226A1L170 272 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-204ENST00000409441 RAD1O60671 282 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 SNAP29O95721 258 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 GNAO1P09471 354 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 GSTT1P30711 240 aa12.59□□□□□ -0.39
LIMS1-204ENST00000409441 SHC2P98077 582 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms