RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CKMT1AP12532 417 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 DCKP27707 260 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 DNAJA1P31689 397 aaKnown RBP17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 CSF2RBP32927 897 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 SEPHS1P49903 392 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 OLR1P78380 273 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 SIM1P81133 766 aaPredicted RBP17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 BIKQ13323 160 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 COX20Q5RI15 118 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 SNAP47Q5SQN1 464 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 GUSBP11Q6P575 273 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 ZNF595Q8IYB9 648 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 OR4D9Q8NGE8 314 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 SUN3Q8TAQ9 357 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 TMIGD2Q96BF3 282 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 MBOAT4Q96T53 435 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 CXorf21Q9HAI6 301 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 FSCN3Q9NQT6 498 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 PTGFRNQ9P2B2 879 aa17.1■□□□□ 0.33
CCDC88C-203ENST00000389856 CABIN1Q9Y6J0 2220 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 BDP1A6H8Y1 2624 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 A0A0A6YYC8 382 aaPredicted RBP17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 PATE3B3GLJ2 98 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 TMEM150CB9EJG8 249 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 I3L1I5 382 aaPredicted RBP17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 CYR61O00622 381 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 CHST10O43529 356 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 HCRTR1O43613 425 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 ABCB7O75027 752 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 ZNF682O95780 498 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 CLIC3O95833 236 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 AGR2O95994 175 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 FPR1P21462 350 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 ITGA1P56199 1179 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 ACY1Q03154 408 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 ZIK1Q3SY52 487 aaPredicted RBP17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 REEP3Q6NUK4 255 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 CCDC80Q76M96 950 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 CLVS1Q8IUQ0 354 aaPredicted RBP17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 UCN3Q969E3 161 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 CSF3RQ99062 836 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 NDC1Q9BTX1 674 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 LRRN3Q9H3W5 708 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 POLR1BQ9H9Y6 1135 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 SMURF2Q9HAU4 748 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 GPATCH2Q9NW75 528 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 P2RX2Q9UBL9 471 aa17.09■□□□□ 0.33
CCDC88C-203ENST00000389856 ADAMTS9Q9P2N4 1935 aa17.08■□□□□ 0.33
CCDC88C-203ENST00000389856 SUV39H1O43463 412 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 HS6ST1O60243 411 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 NOL3O60936 208 aaKnown RBP17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 RPLP0P05388 317 aaKnown RBP17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 C8orf89P0DMQ9 161 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 CRHBPP24387 322 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 KCNAB2Q13303 367 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 C6orf141Q5SZD1 244 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 DHRS4L2Q6PKH6 230 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 TMEM107Q6UX40 140 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 KCTD8Q6ZWB6 473 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 PRSS41Q7RTY9 318 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 ZC3H7AQ8IWR0 971 aaKnown RBP17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 ZNF566Q969W8 418 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 ISOC1Q96CN7 298 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 ELP4Q96EB1 424 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 CUTCQ9NTM9 273 aa17.08■□□□□ 0.32
CCDC88C-203ENST00000389856 LOC100130705A0A1B0GUX0 176 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 DUXAA6NLW8 204 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 GALR2O43603 387 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 ASNA1O43681 348 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 ATP1B1P05026 303 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 NUDT7P0C024 238 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 CCDC159P0C7I6 412 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 MATN1P21941 496 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 GRK6P43250 576 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 CFHR1Q03591 330 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 KEAP1Q14145 624 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 PROX2Q3B8N5 592 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 ZNF691Q5VV52 312 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 NUP43Q8NFH3 380 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 OR5T3Q8NGG3 340 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 OR9A2Q8NGT5 310 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 NFKBIDQ8NI38 313 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 MIPOL1Q8TD10 442 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 FBLIM1Q8WUP2 373 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 RASSF5Q8WWW0 418 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 MMABQ96EY8 250 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 MS4A4EQ96PG1 132 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 NUDT22Q9BRQ3 303 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 PELOQ9BRX2 385 aaKnown RBP17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 AMBRA1Q9C0C7 1298 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 ARRDC1-AS1Q9H2J1 176 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 TRPC4Q9UBN4 977 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 SRPK3Q9UPE1 567 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 LY6G6EA0A0G2JKS1 128 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 TRIM64BA6NI03 449 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 FOXS1O43638 330 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 MRPS14O60783 128 aaKnown RBP17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 SOX30O94993 753 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 MYF5P13349 255 aa17.07■□□□□ 0.32
CCDC88C-203ENST00000389856 IGFBP5P24593 272 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms