RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CEBPEQ15744 281 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 AGKQ53H12 422 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 TCHHL1Q5QJ38 904 aaPredicted RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 C1orf189Q5VU69 101 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 RAET1GQ6H3X3 334 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 RBM43Q6ZSC3 357 aaKnown RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 SLC22A16Q86VW1 577 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 GVQW1Q8N7I0 195 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ZNRF1Q8ND25 227 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ANKRD20A12PQ8NF67 263 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 SPPL2AQ8TCT8 520 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 PNPLA2Q96AD5 504 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 NABP1Q96AH0 204 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 ANKRD27Q96NW4 1050 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 FTHL17Q9BXU8 183 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 NLNQ9BYT8 704 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 NACA2Q9H009 215 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 RAB17Q9H0T7 212 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 LIME1Q9H400 295 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 DCTPP1Q9H773 170 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 NT5DC2Q9H857 520 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 NMUR1Q9HB89 426 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 NGBQ9NPG2 151 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 DEPPQ9NTK1 212 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 EIF3KQ9UBQ5 218 aaKnown RBP1.68□□□□□ -2.14
VPS13A-206ENST00000376646 LHX3Q9UBR4 397 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 IL20RAQ9UHF4 553 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 PLEKHA6Q9Y2H5 1048 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 KLHDC2Q9Y2U9 406 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 SLC6A5Q9Y345 797 aa1.68□□□□□ -2.14
VPS13A-206ENST00000376646 FER1L5A0AVI2 2057 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 RALGAPA1Q6GYQ0 2036 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 ZMYM6O95789 1325 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 SALL1Q9NSC2 1324 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 TRGV8A0A0C4DH27 118 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 PDHXO00330 501 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 TXNL1O43396 289 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 TSPAN2O60636 221 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 FCER2P06734 321 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 CYP11B1P15538 503 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 FUT1P19526 365 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 RAG2P55895 527 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 POLR2FP61218 127 aaKnown RBP1.67□□□□□ -2.14
VPS13A-206ENST00000376646 CDKL1Q00532 357 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 GABPB1Q06547 395 aaPredicted RBP1.67□□□□□ -2.14
VPS13A-206ENST00000376646 SPP2Q13103 211 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 ZKSCAN8Q15776 578 aaPredicted RBP1.67□□□□□ -2.14
VPS13A-206ENST00000376646 UNC50Q53HI1 259 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 IRGCQ6NXR0 463 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 FAM159AQ6UWV7 190 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 VITQ6UXI7 678 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 ASRGL1Q7L266 308 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 CARM1Q86X55 608 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 CCDC71Q8IV32 467 aaPredicted RBP1.67□□□□□ -2.14
VPS13A-206ENST00000376646 CD177Q8N6Q3 437 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 BANPQ8N9N5 519 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 OR1K1Q8NGR3 316 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 OR4F5Q8NH21 305 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 RDH11Q8TC12 318 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 TMEM37Q8WXS4 190 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 FCGR1BQ92637 280 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 ACCSQ96QU6 501 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 STRADBQ9C0K7 418 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 ATG10Q9H0Y0 220 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 TMEM231Q9H6L2 316 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 GTSE1Q9NYZ3 720 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 MIOXQ9UGB7 285 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 IKZF3Q9UKT9 509 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 FBXO7Q9Y3I1 522 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF175Q9Y473 711 aa1.67□□□□□ -2.14
VPS13A-206ENST00000376646 PTPRUQ92729 1446 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 RGSL1A5PLK6 1076 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 K7EQG2 157 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 OR9G9P0C7N8 305 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 ARF4P18085 180 aaPredicted RBP1.66□□□□□ -2.14
VPS13A-206ENST00000376646 TMOD1P28289 359 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 PTPN4P29074 926 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 PRDX2P32119 198 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 SLC1A6P48664 564 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 NDST1P52848 882 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 SRPXP78539 464 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 MYBPC1Q00872 1141 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 NME3Q13232 169 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 FASTKQ14296 549 aaKnown RBP1.66□□□□□ -2.14
VPS13A-206ENST00000376646 EMC2Q15006 297 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 HKDC1Q2TB90 917 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF528Q3MIS6 628 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 MUC21Q5SSG8 566 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 DDI2Q5TDH0 399 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 IL23RQ5VWK5 629 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 RPAINQ86UA6 219 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 AMZ2Q86W34 360 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 MARCH9Q86YJ5 346 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 RNF148Q8N7C7 305 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF781Q8N8C0 355 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 OR1B1Q8NGR6 318 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 OR4Q3Q8NH05 313 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 RHOXF1Q8NHV9 184 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 FBXO25Q8TCJ0 367 aa1.66□□□□□ -2.14
VPS13A-206ENST00000376646 CAPNS2Q96L46 248 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms