RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 BAG5Q9UL15 447 aa13.48□□□□□ -0.25
HMGA1-203ENST00000374116 SNRNP200O75643 2136 aaKnown RBP13.47□□□□□ -0.25
HMGA1-203ENST00000374116 TAF4O00268 1085 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 SNPHO15079 494 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 SLC16A6O15403 523 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 SH3BGRLO75368 114 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 KLHL18O94889 574 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 FABP3P05413 133 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 PROS1P07225 676 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 HTR1AP08908 422 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 PCMT1P22061 227 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 NR4A1P22736 598 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 ID4P47928 161 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 COL9A2Q14055 689 aaPredicted RBP13.47□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF574Q6ZN55 896 aaPredicted RBP13.47□□□□□ -0.25
HMGA1-203ENST00000374116 COMMD6Q7Z4G1 85 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 BPHLQ86WA6 291 aaPredicted RBP13.47□□□□□ -0.25
HMGA1-203ENST00000374116 AMIGO1Q86WK6 493 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 RCBTB1Q8NDN9 531 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 OR6C4Q8NGE1 309 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 GOT1L1Q8NHS2 421 aaPredicted RBP13.47□□□□□ -0.25
HMGA1-203ENST00000374116 DYNC2LI1Q8TCX1 351 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 TTC9Q92623 222 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 TGM7Q96PF1 710 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.47□□□□□ -0.25
HMGA1-203ENST00000374116 SEMA6CQ9H3T2 930 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 EVA1BQ9NVM1 165 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 HRASLS2Q9NWW9 162 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 SH3BP4Q9P0V3 963 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 TMEFF2Q9UIK5 374 aaPredicted RBP13.47□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF229Q9UJW7 825 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 SATB2Q9UPW6 733 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 EXO1Q9UQ84 846 aaKnown RBP13.47□□□□□ -0.25
HMGA1-203ENST00000374116 KIF26BQ2KJY2 2108 aa13.47□□□□□ -0.25
HMGA1-203ENST00000374116 LOC100130705A0A1B0GUX0 176 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 LOC105371267A0A1B0GV96 52 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 GSAPA4D1B5 854 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 LILRA5A6NI73 299 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 C1QCP02747 245 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 GP1BAP07359 652 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 ITGAMP11215 1152 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 PNLIPP16233 465 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 PRKACGP22612 351 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 PSMB5P28074 263 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 NDUFS1P28331 727 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 HSD17B2P37059 387 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 PIGAP37287 484 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 GPR3P46089 330 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 GP2P55259 537 aaKnown RBP13.46□□□□□ -0.25
HMGA1-203ENST00000374116 KRR1Q13601 381 aaKnown RBP13.46□□□□□ -0.25
HMGA1-203ENST00000374116 RGNQ15493 299 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 C6orf141Q5SZD1 244 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 PRAMEF13Q5VWM6 474 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 FAM92BQ6ZTR7 304 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 VN1R5Q7Z5H4 357 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 LYSMD2Q8IV50 215 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 ADGRF3Q8IZF5 1079 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 METTL4Q8N3J2 472 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 SVOPQ8N4V2 548 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 OR4A15Q8NGL6 344 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 OR10Q1Q8NGQ4 319 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF566Q969W8 418 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 MTERF3Q96E29 417 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 GFM1Q96RP9 751 aaKnown RBP13.46□□□□□ -0.25
HMGA1-203ENST00000374116 MYNNQ9NPC7 610 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 ABCG2Q9UNQ0 655 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 PCDHGA8Q9Y5G5 932 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 U3KQV3 271 aa13.46□□□□□ -0.25
HMGA1-203ENST00000374116 COL27A1Q8IZC6 1860 aaPredicted RBP13.46□□□□□ -0.25
HMGA1-203ENST00000374116 ZNF99A8MXY4 864 aaPredicted RBP13.46□□□□□ -0.26
HMGA1-203ENST00000374116 CAPN5O15484 640 aaPredicted RBP13.46□□□□□ -0.26
HMGA1-203ENST00000374116 DPM1O60762 260 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 RPN2P04844 631 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 PRKCAP17252 672 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 SPINK2P20155 84 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 EFNA1P20827 205 aaPredicted RBP13.46□□□□□ -0.26
HMGA1-203ENST00000374116 FPR1P21462 350 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 PTX3P26022 381 aaPredicted RBP13.46□□□□□ -0.26
HMGA1-203ENST00000374116 PEBP1P30086 187 aaKnown RBP13.46□□□□□ -0.26
HMGA1-203ENST00000374116 DNAJA1P31689 397 aaKnown RBP13.46□□□□□ -0.26
HMGA1-203ENST00000374116 RYKP34925 604 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 PCGF2P35227 344 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 NR4A2P43354 598 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 PDX1P52945 283 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 GNG2P59768 71 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 PPP1R8Q12972 351 aaKnown RBP13.46□□□□□ -0.26
HMGA1-203ENST00000374116 PDE7AQ13946 482 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 HES3Q5TGS1 186 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 ZNF691Q5VV52 312 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 KRT78Q8N1N4 520 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 SPERTQ8NA61 448 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 CHDHQ8NE62 594 aaPredicted RBP13.46□□□□□ -0.26
HMGA1-203ENST00000374116 C16orf78Q8WTQ4 265 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 HSH2DQ96JZ2 352 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 DACH2Q96NX9 599 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 DPH2Q9BQC3 489 aaPredicted RBP13.46□□□□□ -0.26
HMGA1-203ENST00000374116 ACAT2Q9BWD1 397 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 ADNPQ9H2P0 1102 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 ADPRHL2Q9NX46 363 aa13.46□□□□□ -0.26
HMGA1-203ENST00000374116 VNN3Q9NY84 501 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms