RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 TRPV1Q8NER1 839 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 RFKQ969G6 155 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 PCBD2Q9H0N5 130 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 TP63Q9H3D4 680 aaPredicted RBP7□□□□□ -1.29
VPS13A-202ENST00000357409 WSB2Q9NYS7 404 aaPredicted RBP7□□□□□ -1.29
VPS13A-202ENST00000357409 SLC7A11Q9UPY5 501 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 TRBV2A0A0J9YWF9 115 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF99A8MXY4 864 aaPredicted RBP7□□□□□ -1.29
VPS13A-202ENST00000357409 PPM1BO75688 479 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 TGM4P49221 684 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 EEF1AKMT2Q5JPI9 291 aaKnown RBP7□□□□□ -1.29
VPS13A-202ENST00000357409 NPAS3Q8IXF0 933 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 SERTAD4Q9NUC0 356 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 DMAC2Q9NW81 257 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 NKX1-2Q9UD57 310 aaPredicted RBP7□□□□□ -1.29
VPS13A-202ENST00000357409 KCND3Q9UK17 655 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 SLC7A7Q9UM01 511 aa7□□□□□ -1.29
VPS13A-202ENST00000357409 PRPF19Q9UMS4 504 aaKnown RBP7□□□□□ -1.29
VPS13A-202ENST00000357409 ZNHIT1O43257 154 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 RAP2AP10114 183 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 BMP4P12644 408 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 AQP2P41181 271 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 RORCP51449 518 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 HNRNPA0Q13151 305 aaKnown RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 HES1Q14469 280 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SSX2Q16385 188 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PIP5KL1Q5T9C9 394 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 GPR139Q6DWJ6 353 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 BRAT1Q6PJG6 821 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SLC22A16Q86VW1 577 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 GPR26Q8NDV2 337 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SFXN2Q96NB2 322 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SLC22A12Q96S37 553 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SECISBP2Q96T21 854 aaKnown RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 NKX3-1Q99801 234 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 EURLQ9NYK6 297 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 ALG5Q9Y673 324 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PIK3C2BO00750 1634 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 AGPAT2O15120 278 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 OAS1P00973 400 aaKnown RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 TLE3Q04726 772 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 FGL2Q14314 439 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PTGES3Q15185 160 aaKnown RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 POU4F3Q15319 338 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SFT2D3Q587I9 215 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 MFSD5Q6N075 450 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 TOMM5Q8N4H5 51 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 OR51T1Q8NGJ9 327 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 OR5K1Q8NHB7 308 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 THRSPQ92748 146 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 EGLN2Q96KS0 407 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SAMD8Q96LT4 415 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PNMTP11086 282 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SMSP52788 366 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 BDH1Q02338 343 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 APOFQ13790 326 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 RCAN2Q14206 197 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SLC14A2Q15849 920 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF687Q8N1G0 1237 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 DCAF4L2Q8NA75 395 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 MFSD8Q8NHS3 518 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 HERPUD2Q9BSE4 406 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 GPATCH2Q9NW75 528 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 IFNA21P01568 189 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 GLI4P10075 376 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 F3P13726 295 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF44P15621 663 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF28P17035 718 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 NFYBP25208 207 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 ACRV1P26436 265 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 TUBB3Q13509 450 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 KCNJ11Q14654 390 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PRAMEF8Q5VWM4 474 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PRAMEF7Q5VXH5 474 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PHB2Q99623 299 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 CGREF1Q99674 301 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SSX3Q99909 188 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 GFOD1Q9NXC2 390 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 BAZ2BQ9UIF8 2168 aaKnown RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PRAMEF11O60813 436 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 S100A1P23297 94 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 DMWDQ09019 674 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 CEACAM19Q7Z692 300 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 TMCO6Q96DC7 493 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 AIFM2Q9BRQ8 373 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 GNB4Q9HAV0 340 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 GCM1Q9NP62 436 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 CASZ1Q86V15 1759 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 VSTM2BA6NLU5 285 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 MC3RP41968 323 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PIK3CBP42338 1070 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 MAGEA6P43360 314 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 CAV3P56539 151 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 TMEM201Q5SNT2 666 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 TMEM184AQ6ZMB5 413 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 ZER1Q7Z7L7 766 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 CDS1Q92903 461 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 OR4K3Q96R72 315 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 NLE1Q9NVX2 485 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 TFF2Q03403 129 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms