RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 BCKDHAP12694 445 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 HSD17B1P14061 328 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 AMD1P17707 334 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 XRCC1P18887 633 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 CD22P20273 847 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 PTX3P26022 381 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 GRK3P35626 688 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 HPCAL1P37235 193 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 CPA2P48052 419 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 TRA2BP62995 288 aaKnown RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 PRDX1Q06830 199 aaKnown RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ACSM2AQ08AH3 577 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 TESK1Q15569 626 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 RPE65Q16518 533 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 CCSMST1Q4G0I0 132 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 RFTN2Q52LD8 501 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 FBXO48Q5FWF7 155 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 C1orf146Q5VVC0 180 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 IL23RQ5VWK5 629 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ICE2Q659A1 982 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ACSM2BQ68CK6 577 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ZFP1Q6P2D0 407 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 TMIGD1Q6UXZ0 262 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 PAGE2Q7Z2X7 111 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 GDF7Q7Z4P5 450 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 TMPRSS11BQ86T26 416 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 LMNTD1Q8N9Z9 388 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 TNIP2Q8NFZ5 429 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 OR8J2Q8NGG1 315 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 HUS1BQ8NHY5 278 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 SLC37A2Q8TED4 501 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 CT55Q8WUE5 264 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 SLC13A3Q8WWT9 602 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 STMN2Q93045 179 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 PYCR2Q96C36 320 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 SNRNP40Q96DI7 357 aaKnown RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 RNF31Q96EP0 1072 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 LCORQ96JN0 433 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 PPP1R36Q96LQ0 422 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 LURAP1Q96LR2 239 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 PRPF18Q99633 342 aaKnown RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 YIPF4Q9BSR8 244 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 THTPAQ9BU02 230 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 TRIM15Q9C019 465 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ING2Q9H160 280 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 OSGEPL1Q9H4B0 414 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ACTL8Q9H568 366 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 DENND2DQ9H6A0 471 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 RMND5AQ9H871 391 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 RNPEPL1Q9HAU8 725 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 DMRT3Q9NQL9 472 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 IMP3Q9NV31 184 aaKnown RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 TMEM184CQ9NVA4 438 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ATAD3AQ9NVI7 634 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ASF1BQ9NVP2 202 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 FAM120CQ9NX05 1096 aaKnown RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 TMEM181Q9P2C4 612 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 MCM8Q9UJA3 840 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 COA3Q9Y2R0 106 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 POLR3HQ9Y535 204 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 PCYT1BQ9Y5K3 369 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 PTGDR2Q9Y5Y4 395 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 UNC13CQ8NB66 2214 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 PCM1Q15154 2024 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 A0A1W2PPV9 198 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 ANKRD65E5RJM6 399 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 PRSS44E7EML9 344 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 FXYD1O00168 92 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 NR5A2O00482 541 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 FBP2O00757 339 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 GPR42O15529 346 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 PRAMEF4O60810 478 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 BCAS2O75934 225 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-201ENST00000355766 STAMBPO95630 424 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 SDC1P18827 310 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 CAPN3P20807 821 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 ME2P23368 584 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 ITGA3P26006 1051 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 CMPK1P30085 196 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 TIA1P31483 386 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS13A-201ENST00000355766 GCKP35557 465 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 MAGEA8P43361 318 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 ZFP36L2P47974 494 aaKnown RBP6.54□□□□□ -1.36
VPS13A-201ENST00000355766 TRPC1P48995 793 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 CCL11P51671 97 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 PER3P56645 1201 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 EEFSECP57772 596 aaKnown RBP6.54□□□□□ -1.36
VPS13A-201ENST00000355766 PSME3P61289 254 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 UBE2IP63279 158 aaKnown RBP6.54□□□□□ -1.36
VPS13A-201ENST00000355766 SLC25A3Q00325 362 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 HHEXQ03014 270 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 ZNF763Q0D2J5 394 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 KRT33BQ14525 404 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 MTX3Q5HYI7 312 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 TCHHL1Q5QJ38 904 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-201ENST00000355766 LRIF1Q5T3J3 769 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 THEMIS2Q5TEJ8 643 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 PRAMEF9Q5VWM5 478 aa6.54□□□□□ -1.36
VPS13A-201ENST00000355766 NOXRED1Q6NXP6 359 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms