RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 XKP51811 444 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 UGT2B15P54855 530 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 ILKQ13418 452 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 MRM1Q6IN84 353 aaKnown RBP18.25■□□□□ 0.51
COL9A3-201ENST00000343916 PODNL1Q6PEZ8 512 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 MEX3DQ86XN8 651 aaKnown RBP18.25■□□□□ 0.51
COL9A3-201ENST00000343916 KCT2Q8NC54 265 aa18.25■□□□□ 0.51
COL9A3-201ENST00000343916 WDR36Q8NI36 951 aaKnown RBP18.25■□□□□ 0.51
COL9A3-201ENST00000343916 C6orf62Q9GZU0 229 aaPredicted RBP18.25■□□□□ 0.51
COL9A3-201ENST00000343916 SH3D21A4FU49 640 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 MPZL2O60487 215 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 COL9A1P20849 921 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 GPAT3Q53EU6 434 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 LINC00299Q6ZSB3 139 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 KRT73Q86Y46 540 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 CCL4L1Q8NHW4 92 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 HPS1Q92902 700 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 FUZQ9BT04 418 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 RMI1Q9H9A7 625 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 PRSS38A1L453 326 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 EFCAB10A6NFE3 127 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 BTN3A3O00478 584 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 DSCR3O14972 297 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 KHKP50053 298 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 ZNF404Q494X3 552 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 PLAG1Q6DJT9 500 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 LSRQ86X29 649 aaPredicted RBP18.24■□□□□ 0.51
COL9A3-201ENST00000343916 ZG16BQ96DA0 208 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 MGLLQ99685 303 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 CDCA4Q9BXL8 241 aa18.24■□□□□ 0.51
COL9A3-201ENST00000343916 OXSR1O95747 527 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-201ENST00000343916 ASGR2P07307 311 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 MC3RP41968 323 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 TSTQ16762 297 aaKnown RBP18.23■□□□□ 0.51
COL9A3-201ENST00000343916 INAVAQ3KP66 663 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 FBXO43Q4G163 708 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 USP43Q70EL4 1123 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 OR9A2Q8NGT5 310 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 ELSPBP1Q96BH3 223 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 Q96MT0 163 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 FNDC11Q9BVV2 318 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 MAN2C1Q9NTJ4 1040 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 ENTPD4Q9Y227 616 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 HTR3EA5X5Y0 456 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 TP53P04637 393 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-201ENST00000343916 CKMT1AP12532 417 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 TGM1P22735 817 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 NTSR1P30989 418 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 HOXD12P35452 270 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 AHRP35869 848 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 SLC15A1P46059 708 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 TUBA1BP68363 451 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 TPRG1LQ5T0D9 272 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 SLX4IPQ5VYV7 408 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 ANKRD54Q6NXT1 300 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 SLC48A1Q6P1K1 146 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 TUBA1AQ71U36 451 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 TCEANCQ8N8B7 351 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 IL17RCQ8NAC3 791 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 GPA33Q99795 319 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 NKX2-4Q9H2Z4 354 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 C6orf106Q9H6K1 298 aaPredicted RBP18.23■□□□□ 0.51
COL9A3-201ENST00000343916 SLC25A19Q9HC21 320 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 CNOT2Q9NZN8 540 aaKnown RBP18.23■□□□□ 0.51
COL9A3-201ENST00000343916 CLEC2DQ9UHP7 191 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 CES1P1Q9UKY3 287 aa18.23■□□□□ 0.51
COL9A3-201ENST00000343916 METTL15A6NJ78 407 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 FRS3O43559 492 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 MMP11P24347 488 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 CMPK1P30085 196 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 UGT2B10P36537 528 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 BTN3A2P78410 334 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 ABATP80404 500 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 LTB4RQ15722 352 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 TJAP1Q5JTD0 557 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 TMEM53Q6P2H8 277 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 ENPP7Q6UWV6 458 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 CASP12Q6UXS9 341 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 ZER1Q7Z7L7 766 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 IQCHQ86VS3 1027 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 OR4K5Q8NGD3 323 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 LCN9Q8WX39 176 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 KAT2AQ92830 837 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 CRELD1Q96HD1 420 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 SLC6A18Q96N87 628 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 ZSCAN32Q9NX65 697 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 TVP23BQ9NYZ1 205 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 SLC9A8Q9Y2E8 581 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 PCDHGA3Q9Y5H0 932 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 A0A1W2PQF6 199 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 NTN1O95631 604 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 F3P13726 295 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 TMEM31Q5JXX7 168 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 ZNF367Q7RTV3 350 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 AMIGO1Q86WK6 493 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 OR1E3Q8WZA6 343 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 OR2M4Q96R27 311 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 CDADC1Q9BWV3 514 aa18.22■□□□□ 0.51
COL9A3-201ENST00000343916 A0A1W2PRQ8 180 aa18.21■□□□□ 0.51
COL9A3-201ENST00000343916 PROM1O43490 865 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms