RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 PCDHB9Q9Y5E1 797 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ACTR2P61160 394 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM132BQ14DG7 1078 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF542PQ5EBM4 170 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ESRP1Q6NXG1 681 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 CD300LFQ8TDQ1 290 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 WDR89Q96FK6 387 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 EQTNQ9NQ60 294 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 CMTM6Q9NX76 183 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PRR13Q9NZ81 148 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 NIPSNAP2O75323 286 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 RFPL3O75679 317 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PSKH1P11801 424 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PMELP40967 661 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 SUMO1P63165 101 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM240Q5SV17 173 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 C12orf45Q8N5I9 185 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 NSUN5Q96P11 429 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 DMRTA2Q96SC8 542 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 RAB6AP20340 208 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 CDKN2BP42772 138 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 SLC1A2P43004 574 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 MELKQ14680 651 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 SLC38A3Q99624 504 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 FAM159BA6NKW6 160 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PHYHO14832 338 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PLGP00747 810 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 OR56A5P0C7T3 313 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 VHLLQ6RSH7 139 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 HFE2Q6ZVN8 426 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 OR5M11Q96RB7 305 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 NLNQ9BYT8 704 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF768Q9H5H4 540 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 POLMQ9NP87 494 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 NTNG1Q9Y2I2 539 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 SNRPGP15A8MWD9 76 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 DGKAP23743 735 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 GTF2H2Q13888 395 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 GTF2H2CQ6P1K8 395 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 TECPR1Q7Z6L1 1165 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 DEFB128Q7Z7B8 93 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PIGMQ9H3S5 423 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 STYXL1Q9Y6J8 313 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 SLC9A3R1O14745 358 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 FGF10O15520 208 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 SOX2P48431 317 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 CDK5RAP1Q96SZ6 601 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 RPF2Q9H7B2 306 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 NMNAT1Q9HAN9 279 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF705GA8MUZ8 300 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF99A8MXY4 864 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PDGFAP04085 211 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 MYL12AP19105 171 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 SHC2P98077 582 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 C17orf99Q6UX52 265 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 RPLP0P6Q8NHW5 317 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PCDH19Q8TAB3 1148 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ADGRE3Q9BY15 652 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 CIPCQ9C0C6 399 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 MARCH4Q9P2E8 410 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 NDRG3Q9UGV2 375 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 AUP1Q9Y679 476 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 A0A087X0M5 115 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 A0A1B0GX30 115 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ANKRD34CP0C6C1 535 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 UNGP13051 313 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 MEF2AQ02078 507 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 CHRNA6Q15825 494 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 XKR4Q5GH76 650 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 RETSATQ6NUM9 610 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 BTLAQ7Z6A9 289 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 OR6F1Q8NGZ6 308 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PIH1D2Q8WWB5 315 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 CLEC2DQ9UHP7 191 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 TMEM210A6NLX4 147 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 MT-ND2P03891 347 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 C8AP07357 584 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ANXA3P12429 323 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 HOXD8P13378 290 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 FGF9P31371 208 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 SOX9P48436 509 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 MFSD9Q8NBP5 474 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 SPATA13Q96N96 652 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ANKRA2Q9H9E1 313 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ATG12O94817 140 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PGK1P00558 417 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 MIPP30301 263 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 ZNF155Q12901 538 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 GANABQ14697 944 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PON3Q15166 354 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 OR4D6Q8NGJ1 314 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 PDLIM5Q96HC4 596 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 MARVELD1Q9BSK0 173 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 HDHD5Q9BXW7 423 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 MED20Q9H944 212 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 DISC1C4P0D8 188 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 TAGLN2P37802 199 aaKnown RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 RGS8P57771 180 aaPredicted RBP3.38□□□□□ -1.87
SYNE1-201ENST00000341594 RPL13AP3Q6NVV1 102 aa3.38□□□□□ -1.87
SYNE1-201ENST00000341594 CERS6Q6ZMG9 384 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms