RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ASNA1O43681 348 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 RDH16O75452 317 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 HLA-DQA2P01906 255 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 IFI30P13284 250 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 PCGF2P35227 344 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 RAB38P57729 211 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 KLHL12Q53G59 568 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 TMEM207Q6UWW9 146 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 C19orf47Q8N9M1 422 aaKnown RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 OR52E4Q8NGH9 312 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 NFKBIDQ8NI38 313 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 TSSK6Q9BXA6 273 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 GAREM1Q9H706 876 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 RASSF1Q9NS23 344 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 CUTCQ9NTM9 273 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 CUEDC1Q9NWM3 386 aaPredicted RBP6.5□□□□□ -1.37
SF3B1-201ENST00000335508 CMTM6Q9NX76 183 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 IKZF2Q9UKS7 526 aa6.5□□□□□ -1.37
SF3B1-201ENST00000335508 LRRK2Q5S007 2527 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 A8MUI8 341 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 NPIPB8E9PQR5 432 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF823P16415 610 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PFN3P60673 137 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 EFR3AQ14156 821 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 ACOT11Q8WXI4 607 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 OSTF1Q92882 214 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 RPRD1BQ9NQG5 326 aaKnown RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PAPOLBQ9NRJ5 636 aaKnown RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 TM7SF3Q9NS93 570 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PIAS2O75928 621 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 C1QAP02745 245 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 GLB1P16278 677 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 STAT5AP42229 794 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 SLC15A1P46059 708 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 EPHA4P54764 986 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PPP2CBP62714 309 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PPP2CAP67775 309 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 TMEM215Q68D42 235 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 KCTD18Q6PI47 426 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 OR14A16Q8NHC5 309 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 SNX33Q8WV41 574 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PNPLA2Q96AD5 504 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PCOLCE2Q9UKZ9 415 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 NEU3Q9UQ49 428 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 SLC35A3Q9Y2D2 325 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 ATG2BQ96BY7 2078 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 GXYLT2A0PJZ3 443 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 LINC01565O15544 149 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 JRKO75564 520 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 APOC1P02654 83 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 CSF2P04141 144 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 ETFAP13804 333 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 UGT2B7P16662 529 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 GABRA3P34903 492 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 DCTP40126 519 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PSMD7P51665 324 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 TUBA3CQ13748 450 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 TAF13Q15543 124 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 NKAIN1Q4KMZ8 207 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PAGE3Q5JUK9 113 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 ALKBH2Q6NS38 261 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 FBXL6Q8N531 539 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 IL4I1Q96RQ9 567 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 MAP3K3Q99759 626 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 ASPNQ9BXN1 380 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 DGCR6LQ9BY27 220 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PRDM9Q9NQV7 894 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 SPTBN4Q9H254 2564 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 ZFYVE26Q68DK2 2539 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 FXYD1O00168 92 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 TRMUO75648 421 aaKnown RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 RENP00797 406 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 HLA-DPB1P04440 258 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 GIMD1P0DJR0 217 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 ELAVL1Q15717 326 aaKnown RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 FAM71E1Q6IPT2 247 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 CLECL1Q8IZS7 167 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 LILRA3Q8N6C8 439 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PEX11GQ96HA9 241 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF583Q96ND8 569 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 DCAF13Q9NV06 445 aaKnown RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PCDHB14Q9Y5E9 798 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PCDHGA5Q9Y5G8 931 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 NAV2Q8IVL1 2488 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 OR2A25A4D2G3 310 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 GABRR3A8MPY1 467 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 VSTM5A8MXK1 200 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PRR23D1E9PI22 279 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 FARS2O95363 451 aaKnown RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 TACSTD2P09758 323 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PRR23D2P0DMB1 279 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PVRP15151 417 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 SELENOWP63302 87 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 TRA2AQ13595 282 aaKnown RBP eCLIP6.49□□□□□ -1.371e-8■□□□□ 10.4
SF3B1-201ENST00000335508 LRIF1Q5T3J3 769 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 KIAA1211LQ6NV74 962 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 SLC48A1Q6P1K1 146 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PLEKHG7Q6ZR37 379 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 VN1R5Q7Z5H4 357 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms