RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 CTNSO60931 367 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CLEC3AO75596 197 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CDC123O75794 336 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 BEST1O76090 585 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TBX6O95947 436 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 MT-ND5P03915 603 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TUBBP07437 444 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 SFTPBP07988 381 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 SERPINA6P08185 405 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 GZMAP12544 262 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 LYL1P12980 280 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF35P13682 527 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ETS2P15036 469 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 PVRP15151 417 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF18P17022 549 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 OGNP20774 298 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 EPHA1P21709 976 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TCEA1P23193 301 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ALDH3B2P48448 385 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 NUDT6P53370 316 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CMC4P56277 68 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 KCNK10P57789 538 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 RPS3AP61247 264 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 OCA2Q04671 838 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 SLC9A3R2Q15599 337 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 SMU1Q2TAY7 513 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 AARS2Q5JTZ9 985 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ARMC12Q5T9G4 340 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CD276Q5ZPR3 534 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 NCR3LG1Q68D85 454 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 SLC9A4Q6AI14 798 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 RWDD4Q6NW29 188 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ARMC6Q6NXE6 501 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 Q6ZR54 194 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 SNX20Q7Z614 316 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 LUZP2Q86TE4 346 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 RFX6Q8HWS3 928 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 MRPL41Q8IXM3 137 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 KLHDC1Q8N7A1 406 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 SRFBP1Q8NEF9 429 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 FAM71CQ8NEG0 241 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 BRIX1Q8TDN6 353 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 SMARCE1Q969G3 411 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 FBXL20Q96IG2 436 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 USP28Q96RU2 1077 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TIMP4Q99727 224 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 KLHDC3Q9BQ90 382 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CNPY3Q9BT09 278 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 G6PC3Q9BUM1 346 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CALN1Q9BXU9 219 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TLNRD1Q9H1K6 362 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 P2RY12Q9H244 342 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 DPAGT1Q9H3H5 408 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 EXO5Q9H790 373 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 SMYD3Q9H7B4 428 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 COG4Q9H9E3 785 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ZFYVE1Q9HBF4 777 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 YAE1D1Q9NRH1 226 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 NLE1Q9NVX2 485 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM45AQ9NWC5 275 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM9Q9P0T7 183 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF223Q9UK11 482 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 FBXO2Q9UK22 296 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ADAMTS6Q9UKP5 1117 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 FBXO5Q9UKT4 447 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 INTUQ9ULD6 942 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 KLHDC2Q9Y2U9 406 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 PTRH2Q9Y3E5 179 aaKnown RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 WDFY4Q6ZS81 3184 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 MYOFQ9NZM1 2061 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 MEGF8Q7Z7M0 2845 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 DOCK7Q96N67 2140 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 GRID2IPA4D2P6 1211 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 DNAJC9-AS1A6NH13 148 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 A6NJY4 79 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 YJEFN3A6XGL0 299 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 SLC16A4O15374 487 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF208O43345 1280 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 AIREO43918 545 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 GALR3O60755 368 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 COQ9O75208 318 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 HLA-DRAP01903 254 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CCDC166P0CW27 439 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TPBGLP0DKB5 382 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 RALBP11234 206 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ERCC2P18074 760 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 PGCP20142 388 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ITGALP20701 1170 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 DDCP20711 480 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CD34P28906 385 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CRYBB2P43320 205 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 MASP1P48740 699 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 XIAPP98170 497 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 CDK16Q00536 496 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 BST1Q10588 318 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 TBX2Q13207 712 aaPredicted RBP1.33□□□□□ -2.2
LINC00643-201ENST00000334389 ITGADQ13349 1161 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 RCAN2Q14206 197 aa1.33□□□□□ -2.2
LINC00643-201ENST00000334389 HABP2Q14520 560 aaPredicted RBP1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms