RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 DNASE1P24855 282 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 MRPS6P82932 125 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 PRKCZQ05513 592 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 MAP4K2Q12851 820 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF177Q13360 481 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ADAM15Q13444 863 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 TUSC3Q13454 348 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 COL28A1Q2UY09 1125 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF791Q3KP31 576 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 MACC1Q6ZN28 852 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 OR4F15Q8NGB8 312 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 OR52N2Q8NGI0 321 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 C12orf66Q96MD2 445 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 MED18Q9BUE0 208 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 PRR14Q9BWN1 585 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 CUEDC1Q9NWM3 386 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 LHX3Q9UBR4 397 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 KCNMB2Q9Y691 235 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 TRPM7Q96QT4 1865 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 PIPSLA2A3N6 862 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 A8MVJ9 347 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 BET1O15155 118 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 PRMT3O60678 531 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 IFNA7P01567 189 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 EIF4EP06730 217 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 LIMS3P0CW19 117 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 LIMS4P0CW20 117 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 GIFP27352 417 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ATP12AP54707 1039 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 RPS13P62277 151 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 TLE2Q04725 743 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 TSTA3Q13630 321 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 ADGRG3Q86Y34 549 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 NXPE1Q8N323 547 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 STPG2Q8N412 459 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 C11orf24Q96F05 449 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 PLA2G12AQ9BZM1 189 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 CHIAQ9BZP6 476 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 RC3H2Q9HBD1 1191 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 GPBP1L1Q9HC44 474 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 KCTD5Q9NXV2 234 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 CLCA2Q9UQC9 943 aa12.73□□□□□ -0.37
CCDC88C-201ENST00000331194 TCRBV16S1A1N1A0A5B0 115 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 GABRPO00591 440 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 SMAD6O43541 496 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 BNIP3LO60238 219 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 FZD6O60353 706 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ATG13O75143 517 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 CH25HO95992 272 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ADAP00813 363 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 TYMPP19971 482 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 BMP8BP34820 402 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 RAB14P61106 215 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 TPBGQ13641 420 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 MRPL58Q14197 206 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 MBTPS1Q14703 1052 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ST3GAL2Q16842 350 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ZSWIM7Q19AV6 140 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 FAM27D1Q5T7N8 215 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 NDUFAF5Q5TEU4 345 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 DGLUCYQ7Z3D6 616 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 BMP8AQ7Z5Y6 402 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 LINC00518Q8N0U6 118 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF687Q8N1G0 1237 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 WBP1Q96G27 269 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 SCMH1Q96GD3 660 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 MYO19Q96H55 970 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 FUBP3Q96I24 572 aaKnown RBP eCLIP12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 CXorf58Q96LI9 332 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ABHD1Q96SE0 405 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 EGLN3Q9H6Z9 239 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 SEMA3GQ9NS98 782 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 SPATA6Q9NWH7 488 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ZSCAN32Q9NX65 697 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 NKIRAS2Q9NYR9 191 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 CORO2BQ9UQ03 480 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 PRR23AA6NEV1 266 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 DHFRP00374 187 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 BCHEP06276 602 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 CD3GP09693 182 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 DRD5P21918 477 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 PPIBP23284 216 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 CDH4P55283 916 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF33BQ06732 778 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ANXA8L1Q5VT79 327 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 BICRALQ6AI39 1079 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 CXorf57Q6NSI4 855 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 LUZP2Q86TE4 346 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 COMTD1Q86VU5 262 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ANKRD53Q8N9V6 530 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ASB11Q8WXH4 323 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 OTUB1Q96FW1 271 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 COQ10AQ96MF6 247 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 SLC12A9Q9BXP2 914 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 MRPL39Q9NYK5 338 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 CD84Q9UIB8 345 aa12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ZFR2Q9UPR6 939 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF623O75123 536 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 EPHX1P07099 455 aa12.71□□□□□ -0.37
CCDC88C-201ENST00000331194 GABRA5P31644 462 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms