RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 APMAPQ9HDC9 416 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 IGKV6-21A0A0C4DH24 114 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 OR2AT4A6NND4 320 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 FBP2O00757 339 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 UBL3O95164 117 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 DIRAS3O95661 229 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 GJB1P08034 283 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 TACR2P21452 398 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 IST1P53990 364 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 DLX5P56178 289 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 MALLQ13021 153 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 ULK3Q6PHR2 472 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 HOXB13Q92826 284 aaPredicted RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 RGCCQ9H4X1 137 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 ABCB10Q9NRK6 738 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 DUS2Q9NX74 493 aaKnown RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 GAPDHSO14556 408 aaPredicted RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 NDUFV2P19404 249 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 NFYAP23511 347 aaPredicted RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 NFYBP25208 207 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 RANP62826 216 aaKnown RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 VLDLRP98155 873 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 CAP1Q01518 475 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 TLR1Q15399 786 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 RAB11BQ15907 218 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 CHADLQ6NUI6 762 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 RGMBQ6NW40 437 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 LIPIQ6XZB0 460 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 PSMG2Q969U7 264 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 TOX2Q96NM4 488 aa3.84□□□□□ -1.8
USH2A-201ENST00000307340 ZNF334Q9HCZ1 680 aaPredicted RBP3.84□□□□□ -1.8
USH2A-201ENST00000307340 NCF1BA6NI72 391 aaPredicted RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 A8MT66 165 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 NCF1CA8MVU1 366 aaPredicted RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 ADAMTS4O75173 837 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 HTR1AP08908 422 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 GGT1P19440 569 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 PRKAR1BP31321 381 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 PIGAP37287 484 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 ALDH3B2P48448 385 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 OR2B6P58173 313 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 BTG1P62324 171 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 SLC10A7Q0GE19 358 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 GPR68Q15743 365 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 TRMT10BQ6PF06 316 aaKnown RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 ABHD11Q8NFV4 315 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 SFXN1Q9H9B4 322 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 ST8SIA5O15466 376 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 ZNF821O75541 412 aaPredicted RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 GOT2P00505 430 aaKnown RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 ADH5P11766 374 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 OSMP13725 252 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 IFNGR1P15260 489 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 PRPH2P23942 346 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 RIDAP52758 137 aaKnown RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 LSAMPQ13449 338 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 CRTC2Q53ET0 693 aaPredicted RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 TMEM64Q6YI46 380 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 DPY19L2P2Q6ZN68 376 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 MFSD6LQ8IWD5 586 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 SLC22A8Q8TCC7 542 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 HERVK_113Q902F9 699 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 SLC29A1Q99808 456 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 SLC7A7Q9UM01 511 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 RBM7Q9Y580 266 aaKnown RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 F6UZH7 168 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 ITGB7P26010 798 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 GATMP50440 423 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 CSNK2A1P68400 391 aaPredicted RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 GK2Q14410 553 aaPredicted RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 FIGNL1Q6PIW4 674 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 UCN3Q969E3 161 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 PLCXD1Q9NUJ7 323 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.83□□□□□ -1.8
USH2A-201ENST00000307340 TAS2R14Q9NYV8 317 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 NENFQ9UMX5 172 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 MAP4K5Q9Y4K4 846 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 OR6C76A6NM76 312 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 TLR4O00206 839 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 SNTB2Q13425 540 aaKnown RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 UBAP2LQ14157 1087 aaKnown RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 CD163Q86VB7 1156 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 OR2L13Q8N349 312 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 ABCB8Q9NUT2 735 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 PHF24Q9UPV7 400 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 SLC22A14Q9Y267 594 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 ENPP4Q9Y6X5 453 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 DDTLA6NHG4 134 aaPredicted RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 RTCAO00442 366 aaKnown RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 IMPA2O14732 288 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 HLA-HP01893 362 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 CD48P09326 243 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 SPARCP09486 303 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 TCEA1P23193 301 aaKnown RBP3.83□□□□□ -1.8
USH2A-201ENST00000307340 CCR7P32248 378 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 IL17AQ16552 155 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 TRILQ7L0X0 811 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 KIAA0319LQ8IZA0 1049 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 BEST4Q8NFU0 473 aa3.83□□□□□ -1.8
USH2A-201ENST00000307340 PCDHA9Q9Y5H5 950 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms