RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SLC35F5Q8WV83 523 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 RSC1A1Q92681 617 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 IMP4Q96G21 291 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ZDHHC12Q96GR4 267 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF778Q96MU6 729 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SLC22A12Q96S37 553 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TIGARQ9NQ88 270 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ACSS1Q9NUB1 689 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 VSX1Q9NZR4 365 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CYP8B1Q9UNU6 501 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 I6L893 689 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GRM6O15303 877 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ALDH2P05091 517 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SCG5P05408 212 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SMIM6P0DI80 62 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GTF2F2P13984 249 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 AKR1A1P14550 325 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GOT1P17174 413 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CSNK2A2P19784 350 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 PPT1P50897 306 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 HSD17B7P56937 341 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 HABP2Q14520 560 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TRAPPC6BQ86SZ2 158 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ACBD7Q8N6N7 88 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 OR7G2Q8NG99 324 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 FAM174AQ8TBP5 190 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 RNF128Q8TEB7 428 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 RSPRY1Q96DX4 576 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 HSPBAP1Q96EW2 488 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 HSH2DQ96JZ2 352 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ACTRT3Q9BYD9 372 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TBC1D17Q9HA65 648 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 HEMK1Q9Y5R4 338 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF831Q5JPB2 1677 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 A0A0G2JN53 185 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 MANBAO00462 879 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 BRINP1O60477 761 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ITGB1P05556 798 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ZDHHC11BP0C7U3 371 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 HOXC13P31276 330 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CLCN3P51790 818 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GP2P55259 537 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 C21orf58P58505 322 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CDK3Q00526 305 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SPOCK1Q08629 439 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 PPA1Q15181 289 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 C16orf59Q7L2K0 433 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 DENND1CQ8IV53 801 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM102Q8N9M5 508 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TRMT10AQ8TBZ6 339 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ADAMTS15Q8TE58 950 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SMPDL3AQ92484 453 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SMPDL3BQ92485 455 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM203Q969S6 136 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 RGMAQ96B86 450 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SENP8Q96LD8 212 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TSNAXQ99598 290 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF251Q9BRH9 671 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TPT1P8Q9HAU6 139 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ADAMTS6Q9UKP5 1117 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF490Q9ULM2 529 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CAMK2AQ9UQM7 478 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 NOP16Q9Y3C1 178 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 YTHDF2Q9Y5A9 579 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 PCDHGA7Q9Y5G6 932 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TDRD6O60522 2096 aaKnown RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 DAPL1A0PJW8 107 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 AURKAO14965 403 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF207O43670 478 aaKnown RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 NDUFV1P49821 464 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 CDK6Q00534 326 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 OC90Q02509 493 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PPIGQ13427 754 aaKnown RBP eCLIP5.01□□□□□ -1.618e-7■■■□□ 15.7
SCN1A-201ENST00000303395 RAB30Q15771 203 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 GRIK5Q16478 980 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 FCRLBQ6BAA4 426 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 C6orf120Q7Z4R8 191 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 HSD17B13Q7Z5P4 300 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TAAR1Q96RJ0 339 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 FUZQ9BT04 418 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 POLDIP3Q9BY77 421 aaKnown RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ULBP1Q9BZM6 244 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ABCG5Q9H222 651 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ASB8Q9H765 288 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PCDH12Q9NPG4 1184 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SDHAF3Q9NRP4 125 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SMCO4Q9NRQ5 59 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TDP1Q9NUW8 608 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 PCDHGA8Q9Y5G5 932 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 KPTNQ9Y664 436 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 SIPA1L3O60292 1781 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TVP23AA6NH52 213 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 TRAPPC6AO75865 159 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 GLSO94925 669 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 H2AFB2P0C5Z0 115 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 P2RX1P51575 399 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 DBPQ10586 325 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 MINDY4Q4G0A6 757 aa5.01□□□□□ -1.61
SCN1A-201ENST00000303395 DNAJC14Q6Y2X3 702 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF619Q8N2I2 560 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms