RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ASPNQ9BXN1 380 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 EPHX3Q9H6B9 360 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 PLD2O14939 933 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 ATP6V1E1P36543 226 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 RPS19P39019 145 aaKnown RBP15.69■□□□□ 0.1
VPS54-201ENST00000272322 GPR4P46093 362 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 MAN2A2P49641 1150 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 TAS2R41P59536 307 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 PRDX1Q06830 199 aaKnown RBP15.69■□□□□ 0.1
VPS54-201ENST00000272322 TJAP1Q5JTD0 557 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 SPANXN2Q5MJ10 180 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 SAXO2Q658L1 398 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 PLAG1Q6DJT9 500 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 ZC3H14Q6PJT7 736 aaKnown RBP15.69■□□□□ 0.1
VPS54-201ENST00000272322 PARM1Q6UWI2 310 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 UNC5DQ6UXZ4 953 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 USP43Q70EL4 1123 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 NLGN4YQ8NFZ3 816 aaPredicted RBP15.69■□□□□ 0.1
VPS54-201ENST00000272322 C1GALT1C1Q96EU7 318 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 VMP1Q96GC9 406 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 FAM46AQ96IP4 442 aaKnown RBP15.69■□□□□ 0.1
VPS54-201ENST00000272322 THSD1Q9NS62 852 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 FTSJ1Q9UET6 329 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 AGAP5A6NIR3 686 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 FAM183AA6NL82 134 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 ASGR2P07307 311 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 CD97P48960 835 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 C21orf58P58505 322 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 ZNF91Q05481 1191 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 DPTQ07507 201 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 ATAT1Q5SQI0 421 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 C22orf42Q6IC83 251 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 DESI1Q6ICB0 168 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 KIAA1161Q6NSJ0 714 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 SLC30A6Q6NXT4 461 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 ENPP7Q6UWV6 458 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 LYSMD2Q8IV50 215 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 ZFPM2Q8WW38 1151 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 FGF22Q9HCT0 170 aa15.69■□□□□ 0.1
VPS54-201ENST00000272322 SPIN1Q9Y657 262 aaPredicted RBP15.69■□□□□ 0.1
VPS54-201ENST00000272322 MDC1Q14676 2089 aaKnown RBP15.68■□□□□ 0.1
VPS54-201ENST00000272322 TTC36A6NLP5 189 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 ZAR1LA6NP61 321 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 KMOO15229 486 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 OSMP13725 252 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 NTSP30990 170 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 CD79BP40259 229 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 SLC16A1P53985 500 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 SIGLEC11Q96RL6 698 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 SPATA9Q9BWV2 254 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 TTTY10Q9BZA0 68 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 NFKBIL1Q9UBC1 381 aaPredicted RBP15.68■□□□□ 0.1
VPS54-201ENST00000272322 P2RX2Q9UBL9 471 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 PAIP2BQ9ULR5 123 aaKnown RBP15.68■□□□□ 0.1
VPS54-201ENST00000272322 MAPRE3Q9UPY8 281 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 EFCAB10A6NFE3 127 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 SOBPA7XYQ1 873 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 MYL12BO14950 172 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 AIFM1O95831 613 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 PVRP15151 417 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 TGM1P22735 817 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 EIF2DP41214 584 aaKnown RBP15.68■□□□□ 0.1
VPS54-201ENST00000272322 GSTM5P46439 218 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 SPHARQ15513 63 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 SLC35F1Q5T1Q4 408 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 C1orf53Q5VUE5 145 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 WDR34Q96EX3 536 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 METTL2AQ96IZ6 378 aaKnown RBP15.68■□□□□ 0.1
VPS54-201ENST00000272322 MAPKAP1Q9BPZ7 522 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 RBCK1Q9BYM8 510 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 STARD5Q9NSY2 213 aa15.68■□□□□ 0.1
VPS54-201ENST00000272322 TDRD6O60522 2096 aaKnown RBP15.68■□□□□ 0.1
VPS54-201ENST00000272322 CCRL2O00421 344 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 HBQ1P09105 142 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 KCNJ5P48544 419 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 RAB28P51157 221 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 GPR68Q15743 365 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 SMAP2Q8WU79 429 aaPredicted RBP15.67■□□□□ 0.1
VPS54-201ENST00000272322 TMEM74BQ9NUR3 256 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 ENTPD4Q9Y227 616 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 GSAPA4D1B5 854 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 SNPHO15079 494 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 DDX5P17844 614 aaKnown RBP15.67■□□□□ 0.1
VPS54-201ENST00000272322 UBE3AQ05086 875 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 ZNF311Q5JNZ3 666 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 GHDCQ8N2G8 530 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 LCN9Q8WX39 176 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 ZNF354BQ96LW1 612 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 NEUROD4Q9HD90 331 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 ADAP2Q9NPF8 381 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 PHPT1Q9NRX4 125 aaPredicted RBP15.67■□□□□ 0.1
VPS54-201ENST00000272322 REV1Q9UBZ9 1251 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.67■□□□□ 0.1
VPS54-201ENST00000272322 AP3D1O14617 1153 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 CSO75390 466 aaKnown RBP15.67■□□□□ 0.1
VPS54-201ENST00000272322 CDRT1O95170 752 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 RPN2P04844 631 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 NR4A2P43354 598 aa15.67■□□□□ 0.1
VPS54-201ENST00000272322 ZNF770Q6IQ21 691 aaPredicted RBP15.67■□□□□ 0.1
VPS54-201ENST00000272322 ZNF730Q6ZMV8 503 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms