RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZBED3Q96IU2 234 aaPredicted RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 RBCK1Q9BYM8 510 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 TP63Q9H3D4 680 aaPredicted RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 FOLH1BQ9HBA9 442 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 TREM1Q9NP99 234 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 C19orf25Q9UFG5 118 aaPredicted RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 FARSAQ9Y285 508 aaKnown RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 ACTL7AQ9Y615 435 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 KNL1Q8NG31 2342 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 LOC100509620A0A075B734 347 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 HTR3EA5X5Y0 456 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 TMEM189-UBE2V1I3L0A0 370 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 PLD2O14939 933 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 PCGF2P35227 344 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 ACVR1BP36896 505 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 CRYZQ08257 329 aaKnown RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 GK3PQ14409 553 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 UAP1L1Q3KQV9 507 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 LRRN1Q6UXK5 716 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 C3orf58Q8NDZ4 430 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 MDGA1Q8NFP4 955 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 KCNN1Q92952 543 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 ZNF304Q9HCX3 659 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 C14orf166Q9Y224 244 aaKnown RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 AP1M2Q9Y6Q5 423 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 A8MU76 341 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 KCNJ13O60928 360 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 SPARCP09486 303 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 CSF2RAP15509 400 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 TNFRSF1BP20333 461 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 OPRL1P41146 370 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 RPL19P84098 196 aaKnown RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 SLC14A2Q15849 920 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 FOXRED2Q8IWF2 684 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 SPARTQ8N0X7 666 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 GDPD1Q8N9F7 314 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 ARRDC2Q8TBH0 407 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 CACNG6Q9BXT2 260 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 MTHFD2LQ9H903 347 aaPredicted RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 RNF121Q9H920 327 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 NMNAT1Q9HAN9 279 aaPredicted RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 TMEM184CQ9NVA4 438 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 PAQR5Q9NXK6 330 aaPredicted RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 RABL2AQ9UBK7 228 aaPredicted RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 INTS6Q9UL03 887 aaKnown RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 RABL2BQ9UNT1 228 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 FUOMA2VDF0 154 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 CD8B2A6NJW9 211 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 CD8BP10966 210 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 CYBAP13498 195 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 CFL1P23528 166 aaKnown RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 GRK5P34947 590 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 UGT2B10P36537 528 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 GPR4P46093 362 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 NTRK2Q16620 822 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 NDUFAF5Q5TEU4 345 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 ARMCX6Q7L4S7 300 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 PHC2Q8IXK0 858 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 ZFP41Q8N8Y5 198 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 GPR26Q8NDV2 337 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 CASTOR1Q8WTX7 329 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 SMARCD2Q92925 531 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 CHFRQ96EP1 664 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 ZC3H10Q96K80 434 aaKnown RBP10.24□□□□□ -0.77
CD44-201ENST00000263398 OR4K3Q96R72 315 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 C20orf27Q9GZN8 174 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 PCDHB16Q9NRJ7 776 aa10.24□□□□□ -0.77
CD44-201ENST00000263398 OR6C74A6NCV1 312 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 CASRP41180 1078 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 ZNF41P51814 821 aaPredicted RBP10.23□□□□□ -0.77
CD44-201ENST00000263398 CACNA1SQ13698 1873 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 CBFBQ13951 182 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 OCLNQ16625 522 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 LRIT3Q3SXY7 679 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 CLLU1OSQ5K130 101 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 TMPRSS12Q86WS5 348 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 METTL25Q8N6Q8 603 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 CSNK1A1LQ8N752 337 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 RASGEF1AQ8N9B8 481 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 GATSQ8NAP1 163 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 ACVR1CQ8NER5 493 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 OR5M3Q8NGP4 307 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 PMM1Q92871 262 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 PCDHGA8Q9Y5G5 932 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 TIAM2Q8IVF5 1701 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 A0A1W2PPK0 400 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 HEPACAM2A8MVW5 462 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 C11orf98E9PRG8 122 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 RNASET2O00584 256 aaKnown RBP10.23□□□□□ -0.77
CD44-201ENST00000263398 RNGTTO60942 597 aaKnown RBP10.23□□□□□ -0.77
CD44-201ENST00000263398 RGS9O75916 674 aaPredicted RBP10.23□□□□□ -0.77
CD44-201ENST00000263398 GTF2F2P13984 249 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 FRKP42685 505 aaPredicted RBP10.23□□□□□ -0.77
CD44-201ENST00000263398 GLP1RP43220 463 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 CXCR4P61073 352 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 RAB30Q15771 203 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 MARCH8Q5T0T0 291 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 RASGRP3Q8IV61 690 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 OR9Q2Q8NGE9 314 aa10.23□□□□□ -0.77
CD44-201ENST00000263398 PROKR1Q8TCW9 393 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms