RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 HNRNPA0Q13151 305 aaKnown RBP18.24■□□□□ 0.51
UPF1-201ENST00000262803 ZNF648Q5T619 568 aaPredicted RBP18.24■□□□□ 0.51
UPF1-201ENST00000262803 KANK2Q63ZY3 851 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 ARSKQ6UWY0 536 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 DENND6BQ8NEG7 585 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 FAM3CQ92520 227 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 MTHFD2LQ9H903 347 aaPredicted RBP18.24■□□□□ 0.51
UPF1-201ENST00000262803 MLXQ9UH92 298 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 IFNA5P01569 189 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 ZNF865P0CJ78 1059 aaPredicted RBP18.24■□□□□ 0.51
UPF1-201ENST00000262803 CD68P34810 354 aaPredicted RBP18.24■□□□□ 0.51
UPF1-201ENST00000262803 PSMA6P60900 246 aaKnown RBP18.24■□□□□ 0.51
UPF1-201ENST00000262803 HHEXQ03014 270 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 EXOC3L2Q2M3D2 409 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 CTC1Q2NKJ3 1217 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 HSFX1Q9UBD0 423 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 POU2F3Q9UKI9 436 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 IGLON5A6NGN9 336 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 A6NIZ1 184 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 CYBAP13498 195 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 PTNP21246 168 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 RAP1BP61224 184 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 RAP1AP62834 184 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 DOC2AQ14183 400 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 PM20D1Q6GTS8 502 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 LCN8Q6JVE9 175 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 C1orf94Q6P1W5 598 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 DEFB119Q8N690 84 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 L3HYPDHQ96EM0 354 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 METTL2AQ96IZ6 378 aaKnown RBP18.23■□□□□ 0.51
UPF1-201ENST00000262803 DUSP23Q9BVJ7 150 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 XKR8Q9H6D3 395 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 SPEF1Q9Y4P9 236 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 NRXN3Q9Y4C0 1643 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 ADORA3P0DMS8 318 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 GABARAPL2P60520 117 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 ID2Q02363 134 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 DEFB134Q4QY38 66 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 RAB12Q6IQ22 244 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 SLC18B1Q6NT16 456 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 B3GNT9Q6UX72 402 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 TMEM40Q8WWA1 233 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 GATAD2BQ8WXI9 593 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 TMEM68Q96MH6 324 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 NKX2-4Q9H2Z4 354 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 KLHL42Q9P2K6 505 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 ADAMTS4O75173 837 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 ZNF16P17020 682 aaPredicted RBP18.23■□□□□ 0.51
UPF1-201ENST00000262803 GNRHRP30968 328 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 ARL3P36405 182 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 LDLRAD1Q5T700 205 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 ABHD17BQ5VST6 288 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 CES4AQ5XG92 561 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 ISG20Q96AZ6 181 aaKnown RBP18.23■□□□□ 0.51
UPF1-201ENST00000262803 DPH2Q9BQC3 489 aaPredicted RBP18.23■□□□□ 0.51
UPF1-201ENST00000262803 CNOT11Q9UKZ1 510 aaKnown RBP18.23■□□□□ 0.51
UPF1-201ENST00000262803 FXYD6-FXYD2A0A087WZ82 144 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 C2orf78A6NCI8 922 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 PROS1P07225 676 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 TFPTP0C1Z6 253 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 CELP19835 753 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 OR51G2Q8NGK0 314 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 FBXO27Q8NI29 283 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 ZFYVE21Q9BQ24 234 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 FXYD6Q9H0Q3 95 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 FAM118AQ9NWS6 357 aa18.23■□□□□ 0.51
UPF1-201ENST00000262803 MEGF11A6BM72 1044 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 MEIS3P2A8K0S8 358 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 VNN2O95498 520 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 CSF2P04141 144 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 ACVR1CQ8NER5 493 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 ACTRT3Q9BYD9 372 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 TAS2R8Q9NYW2 309 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 KIR2DS5A0A0G2JLQ3 304 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 A0A0G2JMP0 313 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 A0A0G2JNG1 304 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 KIR2DS3K7RE56 304 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 MLLT10P55197 1068 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 KIR2DS5Q14953 304 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 OR4M2Q8NGB6 313 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 OR9A4Q8NGU2 314 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 SCRN2Q96FV2 425 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 PCTPQ9UKL6 214 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 CLEC4EQ9ULY5 219 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 KDM3BQ7LBC6 1761 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 SMCO3A2RU48 225 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 TMEM189-UBE2V1I3L0A0 370 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 AURKAO14965 403 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 JRKO75564 520 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 ADAP00813 363 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 THEGLP0DJG4 465 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 T-ENOLP0DO92 83 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 PNMTP11086 282 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 CKMT1AP12532 417 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 LCN1P31025 176 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 FGL1Q08830 312 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 NPRL3Q12980 569 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 FUBP1Q96AE4 644 aaKnown RBP18.22■□□□□ 0.51
UPF1-201ENST00000262803 MYRFLQ96LU7 910 aa18.22■□□□□ 0.51
UPF1-201ENST00000262803 MRI1Q9BV20 369 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms