RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PGBD2Q6P3X8 592 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 LYPD4Q6UWN0 246 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 WASH2PQ6VEQ5 465 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 FAM92BQ6ZTR7 304 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 NR2C2APQ86WQ0 139 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 HORMAD2Q8N7B1 307 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 FAM181AQ8N9Y4 354 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 OR5D16Q8NGK9 328 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 RAET1EQ8TD07 263 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 UBTD2Q8WUN7 234 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 XAGE5Q8WWM1 108 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 SLC12A9Q9BXP2 914 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 ARHGAP39Q9C0H5 1083 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 ANGPT4Q9Y264 503 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 TEX51A0A1B0GUA7 166 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 DHFRP00374 187 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 POU3F2P20265 443 aaPredicted RBP13.59□□□□□ -0.23
SDC1-201ENST00000254351 SLC16A1P53985 500 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 PURAQ00577 322 aaKnown RBP13.59□□□□□ -0.23
SDC1-201ENST00000254351 TEKQ02763 1124 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 MAP2K5Q13163 448 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 PODNL1Q6PEZ8 512 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 COMMD6Q7Z4G1 85 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 CPA6Q8N4T0 437 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 GPR32P1Q8NGA4 272 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 OR52N2Q8NGI0 321 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 COQ8AQ8NI60 647 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 SLC38A5Q8WUX1 472 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 UCN3Q969E3 161 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 NEIL2Q969S2 332 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 TMEM19Q96HH6 336 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 RBP7Q96R05 134 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 HCN3Q9P1Z3 774 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 FLVCR2Q9UPI3 526 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 SH2B3Q9UQQ2 575 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 A0A0U1RQF3 1178 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.59□□□□□ -0.23
SDC1-201ENST00000254351 OR5K3A6NET4 321 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 GABRPO00591 440 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 EIF4EP06730 217 aaKnown RBP13.59□□□□□ -0.23
SDC1-201ENST00000254351 ANXA3P12429 323 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 PXNP49023 591 aaPredicted RBP13.59□□□□□ -0.23
SDC1-201ENST00000254351 DSTNP60981 165 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 WDR5P61964 334 aaKnown RBP13.59□□□□□ -0.23
SDC1-201ENST00000254351 GRK1Q15835 563 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 TAF12Q16514 161 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 SFRP4Q6FHJ7 346 aaPredicted RBP13.59□□□□□ -0.23
SDC1-201ENST00000254351 SLC30A6Q6NXT4 461 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 MACC1Q6ZN28 852 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 RASSF6Q6ZTQ3 369 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 PRSS42Q7Z5A4 293 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 COMTD1Q86VU5 262 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 LIX1LQ8IVB5 337 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 TMEM163Q8TC26 289 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 KLK6Q92876 244 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 AIFM2Q9BRQ8 373 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 OR51J1Q9H342 316 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 PIGUQ9H490 435 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 METTL17Q9H7H0 456 aaPredicted RBP13.59□□□□□ -0.23
SDC1-201ENST00000254351 HEXA-AS1Q9H8Q6 139 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 RC3H2Q9HBD1 1191 aaKnown RBP13.59□□□□□ -0.23
SDC1-201ENST00000254351 RDH14Q9HBH5 336 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 TRPC4Q9UBN4 977 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 SEC14L3Q9UDX4 400 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 UBQLN2Q9UHD9 624 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 PCDHB8Q9UN66 801 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 CORO2BQ9UQ03 480 aa13.59□□□□□ -0.23
SDC1-201ENST00000254351 PLXNA4Q9HCM2 1894 aa13.58□□□□□ -0.23
SDC1-201ENST00000254351 A0A1B0GVM2 712 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 SGTAO43765 313 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 IGLV3-27P01718 113 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 OR56A5P0C7T3 313 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 MMP11P24347 488 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 SLC6A12P48065 614 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 RNF144AP50876 292 aaPredicted RBP13.58□□□□□ -0.24
SDC1-201ENST00000254351 AGTRAPQ6RW13 159 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 PRSS45Q7RTY3 260 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 MS4A15Q8N5U1 240 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 BBS1Q8NFJ9 593 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 WDR20Q8TBZ3 569 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 RFT1Q96AA3 541 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 RNF32Q9H0A6 362 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 SLCO1C1Q9NYB5 712 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 CHD5Q8TDI0 1954 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 IFNA14P01570 189 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 IL3P08700 152 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 TALDO1P37837 337 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 GIPRP48546 466 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 ATP12AP54707 1039 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 ANGPT1Q15389 498 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 MEDAGQ5VYS4 303 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 FAM122CQ6P4D5 195 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 GLB1LQ6UWU2 654 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 TRILQ7L0X0 811 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 ZER1Q7Z7L7 766 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 ZNF527Q8NB42 609 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 SOCS4Q8WXH5 440 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 ST8SIA4Q92187 359 aa13.58□□□□□ -0.24
SDC1-201ENST00000254351 RBPMSQ93062 196 aaKnown RBP13.58□□□□□ -0.24
SDC1-201ENST00000254351 COQ10AQ96MF6 247 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms