RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ZNF45Q02386 682 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 FAM46CQ5VWP2 391 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 WDR87Q6ZQQ6 2873 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 LRRTM4Q86VH4 590 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 OR4F15Q8NGB8 312 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 SMAP2Q8WU79 429 aaPredicted RBP20.11■□□□□ 0.81
TRIM28-201ENST00000253024 CDCA4Q9BXL8 241 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 HDHD5Q9BXW7 423 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 TTTY10Q9BZA0 68 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 CACNA1IQ9P0X4 2223 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 ALPK2Q86TB3 2170 aa20.11■□□□□ 0.81
TRIM28-201ENST00000253024 TSPAN11A1L157 253 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 SLC2A10O95528 541 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 TSPAN19P0C672 248 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 RPL3P39023 403 aaKnown RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 CRYBB2P43320 205 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 HMGA2P52926 109 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 RAB25P57735 213 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 RUNX1T1Q06455 604 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 ELAVL3Q14576 367 aaKnown RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 CRTC2Q53ET0 693 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 APOBEC4Q8WW27 367 aaKnown RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 TP53INP1Q96A56 240 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 DIRAS2Q96HU8 199 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 ZNF607Q96SK3 696 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 RAD9AQ99638 391 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 NEK6Q9HC98 313 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 CPNE5Q9HCH3 593 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 KLHL3Q9UH77 587 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 MTCL1Q9Y4B5 1905 aaKnown RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 PLXNA2O75051 1894 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 GSAPA4D1B5 854 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 SAGE2PA6NJ88 616 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 TIMP1P01033 207 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 CSTF2P33240 577 aaKnown RBP eCLIP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 BMPR1AP36894 532 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 MC3RP41968 323 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 HNRNPFP52597 415 aaKnown RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 DEFA1P59665 94 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 DEFA3P59666 94 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 FAM78AQ5JUQ0 283 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 PIP5KL1Q5T9C9 394 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 PSRC1Q6PGN9 363 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 PHC2Q8IXK0 858 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 FBXL6Q8N531 539 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 UBE2E3Q969T4 207 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 SPHK1Q9NYA1 384 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 CA5BQ9Y2D0 317 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 A0A1W2PQL4 384 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 FCMRO60667 390 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 ADH1CP00326 375 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 ADAP00813 363 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 TAS2R41P59536 307 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 EIF4HQ15056 248 aaKnown RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 MLF2Q15773 248 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 SYT14P1Q58G82 188 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 TMEM31Q5JXX7 168 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 SMARCD3Q6STE5 483 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 OR52I1Q8NGK6 324 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 OR9A2Q8NGT5 310 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 TM9SF4Q92544 642 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 CHFRQ96EP1 664 aa20.1■□□□□ 0.81
TRIM28-201ENST00000253024 METTL2AQ96IZ6 378 aaKnown RBP20.1■□□□□ 0.81
TRIM28-201ENST00000253024 A0A1W2PPV9 198 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 TMCC2O75069 709 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 COQ9O75208 318 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 SCG5P05408 212 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 CSNK1G2P78368 415 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 CHRNEQ04844 493 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 PRKCDQ05655 676 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 ZNF791Q3KP31 576 aaPredicted RBP20.09■□□□□ 0.81
TRIM28-201ENST00000253024 ADGRD2Q7Z7M1 963 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 CCDC190Q86UF4 302 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 NRSN1Q8IZ57 195 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 OR5K2Q8NHB8 316 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 SPPL3Q8TCT6 385 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 SLC35B4Q969S0 331 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 RGMAQ96B86 450 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 TOX2Q96NM4 488 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 AMDHD1Q96NU7 426 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 NELL2Q99435 816 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 RHBGQ9H310 441 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 SP140LQ9H930 580 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 SSR3Q9UNL2 185 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 MAPRE3Q9UPY8 281 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 KLK4Q9Y5K2 254 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 C2orf92A0A1B0GVN3 265 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 ZNF860A6NHJ4 632 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 SLC31A1O15431 190 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 KRT8P05787 483 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 ATP6V1E1P36543 226 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 BCL6P41182 706 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 MRPS15P82914 257 aaKnown RBP20.09■□□□□ 0.81
TRIM28-201ENST00000253024 CCNJQ5T5M9 372 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 OR4C11Q6IEV9 310 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 LCTLQ6UWM7 567 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 PRICKLE2Q7Z3G6 844 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 KIF18BQ86Y91 864 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 SLC30A8Q8IWU4 369 aa20.09■□□□□ 0.81
TRIM28-201ENST00000253024 MINDY2Q8NBR6 621 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms