RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 PTCHD1Q96NR3 888 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 PSKH2Q96QS6 385 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 OR52B2Q96RD2 323 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 TWSG1Q9GZX9 223 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 IL17RBQ9NRM6 502 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 PCDHB1Q9Y5F3 818 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 PCDHGA7Q9Y5G6 932 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 TRBC2A0A5B9 178 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 EPHA1P21709 976 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 HNRNPFP52597 415 aaKnown RBP10.62□□□□□ -0.71
MSH6-201ENST00000234420 NR0B2Q15466 257 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 GLB1L3Q8NCI6 653 aaPredicted RBP10.62□□□□□ -0.71
MSH6-201ENST00000234420 GOT1L1Q8NHS2 421 aaPredicted RBP10.62□□□□□ -0.71
MSH6-201ENST00000234420 C2CD4CQ8TF44 421 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 CHPT1Q8WUD6 406 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 CHTF18Q8WVB6 975 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 TCAF1Q9Y4C2 921 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 EIF4EP06730 217 aaKnown RBP10.62□□□□□ -0.71
MSH6-201ENST00000234420 F2RP25116 425 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 EEFSECP57772 596 aaKnown RBP10.62□□□□□ -0.71
MSH6-201ENST00000234420 PXDC1Q5TGL8 231 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 SSX7Q7RTT5 188 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 PXKQ7Z7A4 578 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 CHDHQ8NE62 594 aaPredicted RBP10.62□□□□□ -0.71
MSH6-201ENST00000234420 ARRDC3Q96B67 414 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 MAPKAP1Q9BPZ7 522 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 STXBP5LQ9Y2K9 1186 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 CLTCL1P53675 1640 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 EDDM13A0A1B0GTR0 161 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 J3QR89 54 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 NMBRP28336 390 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 GSK3BP49841 420 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 KCNJ8Q15842 424 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 FAM110CQ1W6H9 321 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 PNCKQ6P2M8 343 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 SLC22A25Q6T423 547 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 OR13C3Q8NGS6 347 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 IL31RAQ8NI17 732 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 NFKBIDQ8NI38 313 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.62□□□□□ -0.713e-7■■■■□ 20.1
MSH6-201ENST00000234420 ZNF596Q8TC21 504 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 SMIM3Q9BZL3 60 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 NXF5Q9H1B4 397 aaKnown RBP10.62□□□□□ -0.71
MSH6-201ENST00000234420 MED16Q9Y2X0 877 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 PTRH2Q9Y3E5 179 aaKnown RBP10.62□□□□□ -0.71
MSH6-201ENST00000234420 GSTM3P21266 225 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 ACVR1BP36896 505 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 MEF2AQ02078 507 aaPredicted RBP10.62□□□□□ -0.71
MSH6-201ENST00000234420 PTCHD3Q3KNS1 767 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 FAM71AQ8IYT1 594 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 FAM58AQ8N1B3 248 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 CAMK1GQ96NX5 476 aa10.62□□□□□ -0.71
MSH6-201ENST00000234420 A0A1B0GVI7 797 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 FADS1O60427 444 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 SBK2P0C263 348 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 ZNF84P51523 738 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 OAZ1P54368 228 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 TAS2R43P59537 309 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 GSTM4Q03013 218 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 HABP2Q14520 560 aaPredicted RBP10.61□□□□□ -0.71
MSH6-201ENST00000234420 ZNF169Q14929 603 aaPredicted RBP10.61□□□□□ -0.71
MSH6-201ENST00000234420 ZBED6CLQ96FA7 236 aaPredicted RBP10.61□□□□□ -0.71
MSH6-201ENST00000234420 AKTIPQ9H8T0 292 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 ARNT2Q9HBZ2 717 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 CPNE5Q9HCH3 593 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 WASH4PA8MWX3 477 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 UGT2B7P16662 529 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 UBE2KP61086 200 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 ZNF33BQ06732 778 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 MALLQ13021 153 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 PARP15Q460N3 678 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.61□□□□□ -0.71
MSH6-201ENST00000234420 TMEM205Q6UW68 189 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 TRPM1Q7Z4N2 1603 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 PRR22Q8IZ63 422 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 ZFP41Q8N8Y5 198 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 MRI1Q9BV20 369 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 CNTN6Q9UQ52 1028 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 PREX2Q70Z35 1606 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 NCOA3Q9Y6Q9 1424 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 PRAMEF2O60811 474 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 TNFSF4P23510 183 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 ITGB8P26012 769 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 ACY1Q03154 408 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 EARS2Q5JPH6 523 aaKnown RBP10.61□□□□□ -0.71
MSH6-201ENST00000234420 STEAP4Q687X5 459 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 KCNIP4Q6PIL6 250 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 SLC30A8Q8IWU4 369 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 GPR137CQ8N3F9 429 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 OR5B17Q8NGF7 314 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 HLA-CQ95604 372 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 PEX11GQ96HA9 241 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 HIPK2Q9H2X6 1198 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 PRORSD1PA6NEY8 169 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 SLC22A2O15244 555 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 AMY2AP04746 511 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 TPT1P13693 172 aaKnown RBP10.61□□□□□ -0.71
MSH6-201ENST00000234420 RAC2P15153 192 aa10.61□□□□□ -0.71
MSH6-201ENST00000234420 SLBPQ14493 270 aaKnown RBP eCLIP10.61□□□□□ -0.71
MSH6-201ENST00000234420 PKDCCQ504Y2 493 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms