RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZNF649Q9BS31 505 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 C1orf43Q9BWL3 253 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 NAA50Q9GZZ1 169 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 NUAK2Q9H093 628 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 FBXL17Q9UF56 701 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TRBC2A0A5B9 178 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 THRBP10828 461 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 HOXA13P31271 388 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ICAM3P32942 547 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 LBX1P52954 281 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ZRANB3Q5FWF4 1079 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ANGEL2Q5VTE6 544 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PRR27Q6MZM9 219 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 THOC6Q86W42 341 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 FAM89BQ8N5H3 189 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 OR1M1Q8NGA1 313 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 OR56B1Q8NGI3 324 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MCFD2Q8NI22 146 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PIGXQ8TBF5 258 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ELP5Q8TE02 316 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TSEN15Q8WW01 171 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RAB40AQ8WXH6 277 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SMARCD2Q92925 531 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM45BQ96B21 275 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PIWIL1Q96J94 861 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ST6GALNAC5Q9BVH7 336 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SGPP1Q9BX95 441 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 IL17RBQ9NRM6 502 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 KLQ9UEF7 1012 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RPTORQ8N122 1335 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MCIDASD6RGH6 385 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DVL2O14641 736 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PI15O43692 258 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SLC19A2O60779 497 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PAK4O96013 591 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SRMP19623 302 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CBLP22681 906 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CD82P27701 267 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SUCLG1P53597 346 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CAV1Q03135 178 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PTPN11Q06124 597 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SOX4Q06945 474 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ARHGAP1Q07960 439 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ARHGEF7Q14155 803 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PAQR3Q6TCH7 311 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RBMS3Q6XE24 437 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ARCQ7LC44 396 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CDYL2Q8N8U2 506 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 OR7A2PQ8NGA2 310 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 IL31RAQ8NI17 732 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ERMAPQ96PL5 475 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DOK1Q99704 481 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 LRFN3Q9BTN0 628 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SLC2A11Q9BYW1 496 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MTFR1LQ9H019 292 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ASB7Q9H672 318 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TRIP12Q14669 1992 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 FGF7P21781 194 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 PTPN3P26045 913 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ACLYP53396 1101 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 WDR4P57081 412 aaKnown RBP3.4□□□□□ -1.86
SCN1A-221ENST00000641996 GPLD1P80108 840 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 SLC18A2Q05940 514 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 NOGQ13253 232 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ATP6V1FQ16864 119 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 COL28A1Q2UY09 1125 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF684Q5T5D7 378 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ACOT1Q86TX2 421 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 PIGQQ9BRB3 760 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF385DQ9H6B1 395 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ALG9Q9H6U8 611 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 NT5DC2Q9H857 520 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 C3orf14Q9HBI5 128 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 EBF1Q9UH73 591 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 FAM205AQ6ZU69 1335 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 LTBP3Q9NS15 1303 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 EFCAB7A8K855 629 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 M0QZK8 103 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 PLRG1O43660 514 aaKnown RBP3.4□□□□□ -1.86
SCN1A-221ENST00000641996 PDE6DO43924 150 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 SOX30O94993 753 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 GALTP07902 379 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 C1SP09871 688 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 CERS1P27544 350 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 DCTDP32321 178 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 GLP1RP43220 463 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 KIAA1024LP59773 190 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 SPP2Q13103 211 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 GABRA6Q16445 453 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ZPBP2Q6X784 338 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 RBPMSQ93062 196 aaKnown RBP3.4□□□□□ -1.86
SCN1A-221ENST00000641996 DCAF5Q96JK2 942 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 SYT11Q9BT88 431 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 HSD3B7Q9H2F3 369 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ADAM18Q9Y3Q7 739 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 M0QZ24 198 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 MAN2B1O00754 1011 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 NCR1O76036 304 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 RRASP10301 218 aa3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms