RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ERVK-19Q9WJR5 959 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 RNF115Q9Y4L5 304 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 ATG4BQ9Y4P1 393 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 ARHGAP21Q5T5U3 1957 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 LTBP1Q14766 1721 aa2.5□□□□□ -2.01
CD44-239ENST00000639002 UNC79Q9P2D8 2635 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 A0A0A6YYD4 124 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 G3V3Y1 287 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 KRTAP4-16G5E9R7 235 aaPredicted RBP2.49□□□□□ -2.01
CD44-239ENST00000639002 ATP9AO75110 1047 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 ALPIP09923 528 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 B4GALT1P15291 398 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 IGFBP5P24593 272 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 PTPN4P29074 926 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 OR1D4P47884 311 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 TRPC1P48995 793 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 SGCBQ16585 318 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 KRTAP5-7Q6L8G8 165 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 CCDC26Q8TAB7 109 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 C9orf85Q96MD7 179 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 BAG1Q99933 345 aaPredicted RBP2.49□□□□□ -2.01
CD44-239ENST00000639002 C19orf43Q9BQ61 176 aa2.49□□□□□ -2.01
CD44-239ENST00000639002 SDR42E2A6NKP2 422 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 SLC17A2O00624 439 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 RAD51DO75771 328 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 TXNDC12O95881 172 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 IGHV3-23P01764 117 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 FCER2P06734 321 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 NUDT17P0C025 328 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 CT45A10P0DMU9 189 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 CASTP20810 708 aaKnown RBP2.48□□□□□ -2.01
CD44-239ENST00000639002 ZP3P21754 424 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 FRKP42685 505 aaPredicted RBP2.48□□□□□ -2.01
CD44-239ENST00000639002 TNFSF10P50591 281 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 SLC7A2P52569 658 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 DIO3P55073 304 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 HSPA14Q0VDF9 509 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 SERTAD2Q14140 314 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 CCDC14Q49A88 953 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 STEAP1BQ6NZ63 245 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 MFSD7Q6UXD7 560 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 GPR142Q7Z601 462 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 METTL23Q86XA0 190 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 TICAM2Q86XR7 235 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 SIX6OS1Q8N1H7 587 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 THEM5Q8N1Q8 247 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 OR4L1Q8NH43 312 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 TFB1MQ8WVM0 346 aaKnown RBP2.48□□□□□ -2.01
CD44-239ENST00000639002 MR1Q95460 341 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 ULK4Q96C45 1275 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 GUCD1Q96NT3 240 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 PRAM1Q96QH2 718 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 PLEKHF1Q96S99 279 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 FAM173AQ9BQD7 235 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 CFDP1Q9UEE9 299 aaPredicted RBP2.48□□□□□ -2.01
CD44-239ENST00000639002 GIMAP2Q9UG22 337 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 SWAP70Q9UH65 585 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 KLK12Q9UKR0 248 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 EMCNQ9ULC0 261 aa2.48□□□□□ -2.01
CD44-239ENST00000639002 RTN2O75298 545 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 APOA4P06727 396 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 ALOX5P09917 674 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 PSMB1P20618 241 aaKnown RBP2.47□□□□□ -2.01
CD44-239ENST00000639002 ALDH3B2P48448 385 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 CD226Q15762 336 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 IRGCQ6NXR0 463 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 STOX1Q6ZVD7 989 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 ERI1Q8IV48 349 aaKnown RBP2.47□□□□□ -2.01
CD44-239ENST00000639002 KLHL7Q8IXQ5 586 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 UBE2Q2Q8WVN8 375 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 SRSF12Q8WXF0 261 aaKnown RBP2.47□□□□□ -2.01
CD44-239ENST00000639002 CDKN2AIPNLQ96HQ2 116 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 JPH2Q9BR39 696 aaPredicted RBP2.47□□□□□ -2.01
CD44-239ENST00000639002 NTMT1Q9BV86 223 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 GPR174Q9BXC1 333 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 DPM3Q9P2X0 92 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 POMT1Q9Y6A1 747 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 MUC19Q7Z5P9 8384 aa2.47□□□□□ -2.01
CD44-239ENST00000639002 KIF7Q2M1P5 1343 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 IGKV6-21A0A0C4DH24 114 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 SPRR5A0A1B0GTR4 108 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 PSMD3O43242 534 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 TYROBPO43914 113 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 GLCEO94923 617 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 SLC16A8O95907 504 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 CT45A8P0DMV1 189 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 CT45A9P0DMV2 189 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 UGT1A6P19224 532 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 FUT3P21217 361 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 BDNFP23560 247 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 SAA4P35542 130 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 ZNF85Q03923 595 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 GIT2Q14161 759 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 CT45A2Q5DJT8 189 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 SPATA46Q5T0L3 261 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 DCLRE1AQ6PJP8 1040 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 THNSL1Q8IYQ7 743 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 RNF175Q8N4F7 328 aa2.46□□□□□ -2.02
CD44-239ENST00000639002 ZNF433Q8N7K0 673 aaPredicted RBP2.46□□□□□ -2.02
CD44-239ENST00000639002 FAM162AQ96A26 154 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms