RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CRCPO75575 148 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 CHN1P15882 459 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 GRK2P25098 689 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 XKP51811 444 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 GPR85P60893 370 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 ABCE1P61221 599 aaKnown RBP17.78■□□□□ 0.44
CLN3-260ENST00000637578 ZNF750Q32MQ0 723 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 MYO7BQ6PIF6 2116 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 RNF111Q6ZNA4 994 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 FGD2Q7Z6J4 655 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 ZNF441Q8N8Z8 693 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 PLSCR2Q9NRY7 297 aa17.78■□□□□ 0.44
CLN3-260ENST00000637578 NBPF19A0A087WUL8 3843 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 TMEM233B4DJY2 109 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 CCL21O00585 134 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 HSPA4LO95757 839 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 CPMP14384 443 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 CNR1P21554 472 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 SERPINB3P29508 390 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 BST1Q10588 318 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 STX3Q13277 289 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 EBPQ15125 230 aaKnown RBP17.77■□□□□ 0.44
CLN3-260ENST00000637578 C3AR1Q16581 482 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 CMPK2Q5EBM0 449 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 OR2M7Q8NG81 312 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 AGR3Q8TD06 166 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 MAGED4Q96JG8 741 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 C20orf27Q9GZN8 174 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 WWTR1Q9GZV5 400 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 SIRT5Q9NXA8 310 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 MCM8Q9UJA3 840 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 FIS1Q9Y3D6 152 aa17.77■□□□□ 0.44
CLN3-260ENST00000637578 CROCCQ5TZA2 2017 aa17.77■□□□□ 0.43
CLN3-260ENST00000637578 MAST4O15021 2626 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 PINLYPA6NC86 204 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 AZIN1O14977 448 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 CT62P0C5K7 136 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 UROSP10746 265 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 PORP16435 677 aaPredicted RBP17.76■□□□□ 0.43
CLN3-260ENST00000637578 S1PR1P21453 382 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 SSTR4P31391 388 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 PTGER1P34995 402 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 RFC3P40938 356 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 SLC1A6P48664 564 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 CASP6P55212 293 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 RAE1P78406 368 aaKnown RBP17.76■□□□□ 0.43
CLN3-260ENST00000637578 SH2D4BQ5SQS7 431 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 MTFR2Q6P444 385 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 GALNT18Q6P9A2 607 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 SCIMPQ6UWF3 145 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 SLC29A4Q7RTT9 530 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 GALNT12Q8IXK2 581 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 MMP21Q8N119 569 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 ZNF615Q8N8J6 731 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 SLC22A8Q8TCC7 542 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 TP53INP1Q96A56 240 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 CCDC120Q96HB5 630 aa17.76■□□□□ 0.43
CLN3-260ENST00000637578 A0A0G2JMM0 328 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 A0A1W2PPB8 328 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 A0A1W2PRS3 328 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 KIR3DP1A8MWS1 328 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 TFECO14948 347 aaPredicted RBP17.75■□□□□ 0.43
CLN3-260ENST00000637578 HS6ST1O60243 411 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 GLSO94925 669 aaPredicted RBP17.75■□□□□ 0.43
CLN3-260ENST00000637578 ATP1B1P05026 303 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 FBXO45P0C2W1 286 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 SOX18P35713 384 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 HSF1Q00613 529 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 MGAT2Q10469 447 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 KANK2Q63ZY3 851 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 DND1Q8IYX4 353 aaKnown RBP17.75■□□□□ 0.43
CLN3-260ENST00000637578 RAB3IL1Q8TBN0 382 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 PAQR8Q8TEZ7 354 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 ITLN2Q8WWU7 325 aaPredicted RBP17.75■□□□□ 0.43
CLN3-260ENST00000637578 SPACA9Q96E40 222 aaPredicted RBP17.75■□□□□ 0.43
CLN3-260ENST00000637578 ZNF681Q96N22 645 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 SORT1Q99523 831 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 FAM173AQ9BQD7 235 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 MANSC1Q9H8J5 431 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 ZDHHC11Q9H8X9 412 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 SACM1LQ9NTJ5 587 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 INTS9Q9NV88 658 aaKnown RBP17.75■□□□□ 0.43
CLN3-260ENST00000637578 ZDHHC2Q9UIJ5 367 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 TINAGQ9UJW2 476 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 TRAF6Q9Y4K3 522 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 NAV2Q8IVL1 2488 aa17.75■□□□□ 0.43
CLN3-260ENST00000637578 FGF4P08620 206 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 CCL3P10147 92 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 HMGCS1Q01581 520 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 FOXO1Q12778 655 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 MAP4K2Q12851 820 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 HYAL4Q2M3T9 481 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 PRICKLE4Q2TBC4 344 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 SPIN4Q56A73 249 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 RGS9BPQ6ZS82 235 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 TRIM42Q8IWZ5 723 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 C17orf47Q8NEP4 570 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 OR7G1Q8NGA0 311 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 OR52N2Q8NGI0 321 aa17.74■□□□□ 0.43
CLN3-260ENST00000637578 ADIPOR1Q96A54 375 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms