RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ZAR1LA6NP61 321 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 B8ZZF3 427 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF670-ZNF695F2Z2N8 137 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 M0R082 166 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CAPN5O15484 640 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ORC5O43913 435 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 LZTS3O60299 673 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 APBB3O95704 486 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CD160O95971 181 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PTHP01270 115 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 NUDT7P0C024 238 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 C4BPBP20851 252 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 BDKRB1P46663 353 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SLC9A3P48764 834 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TAS2R50P59544 299 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 IRF3Q14653 427 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 RNLSQ5VYX0 342 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 KIAA1211LQ6NV74 962 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TMEM220Q6QAJ8 160 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 NXPE4Q6UWF7 544 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CEACAM20Q6UY09 585 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 COMMD6Q7Z4G1 85 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 GALNT10Q86SR1 603 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 FAM217AQ8IXS0 508 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 VWA5B2Q8N398 1253 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 IL17RCQ8NAC3 791 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 LILRB4Q8NHJ6 448 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 UBASH3BQ8TF42 649 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 NUDT8Q8WV74 236 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 APH1BQ8WW43 257 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SMG7Q92540 1137 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ECHDC3Q96DC8 303 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 GIMAP5Q96F15 307 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SLC35G5Q96KT7 338 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 BARD1Q99728 777 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TSSK6Q9BXA6 273 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 HOXD1Q9GZZ0 328 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 RNF38Q9H0F5 515 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 NMNAT1Q9HAN9 279 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 A4GALTQ9NPC4 353 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TRPC4Q9UBN4 977 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SLC6A14Q9UN76 642 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CARD8Q9Y2G2 431 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 RANBP2P49792 3224 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ANKRD12Q6UB98 2062 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SH3BGRLO75368 114 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TNFRSF21O75509 655 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PRAMEF12O95522 483 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PRNPP04156 253 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 HLA-EP13747 358 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 POU2F1P14859 743 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CBLP22681 906 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ERP29P30040 261 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 GKP32189 559 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TNFSF8P32971 234 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CAPZA2P47755 286 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PRLHRP49683 370 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 HMGA2P52926 109 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CRISP3P54108 245 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 B2MP61769 119 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ALDH6A1Q02252 535 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 GANABQ14697 944 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SNAPC1Q16533 368 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 OCLNQ16625 522 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ZXDCQ2QGD7 858 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PRAMEF14Q5SWL7 426 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CATSPEREQ5SY80 951 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 IER5LQ5T953 404 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PRAMEF13Q5VWM6 474 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TXNDC8Q6A555 127 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TYW3Q6IPR3 259 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 METAP1DQ6UB28 335 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 DPY19L3Q6ZPD9 716 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 DDX53Q86TM3 631 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 NUDT13Q86X67 352 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SLC22A15Q8IZD6 547 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TTLQ8NG68 377 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 OR4K1Q8NGD4 311 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 OR4C15Q8NGM1 316 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SPPL3Q8TCT6 385 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ADAMTS14Q8WXS8 1223 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 MOAP1Q96BY2 351 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF689Q96CS4 500 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ERLEC1Q96DZ1 483 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 C1GALT1C1Q96EU7 318 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ALG14Q96F25 216 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 WDFY2Q96P53 400 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 BBS4Q96RK4 519 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PKP4Q99569 1192 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 KCNN2Q9H2S1 579 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 MARCH7Q9H992 704 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PELI2Q9HAT8 420 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ISYNA1Q9NPH2 558 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF226Q9NYT6 803 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 AKAP7Q9P0M2 348 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CD84Q9UIB8 345 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 HCN2Q9UL51 889 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ENTPD4Q9Y227 616 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 IRAK3Q9Y616 596 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PMF1-BGLAPU3KQ54 211 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms