RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 PSMF1Q92530 271 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 LMF1Q96S06 567 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 AKTIPQ9H8T0 292 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 EHD3Q9NZN3 535 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 BAIAP2L1Q9UHR4 511 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 ERVK-19Q9WJR5 959 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 EIF3LQ9Y262 564 aaKnown RBP16.55■□□□□ 0.24
CLN3-247ENST00000636351 WBP11Q9Y2W2 641 aaKnown RBP16.55■□□□□ 0.24
CLN3-247ENST00000636351 CNTRLQ7Z7A1 2325 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 DYTNA2CJ06 578 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 TRPC5OSA6NMA1 111 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 STSP08842 583 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 PRF1P14222 555 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 NTSP30990 170 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 PTGER1P34995 402 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 SOX11P35716 441 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 HPCAL1P37235 193 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 ARG2P78540 354 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 IL23RQ5VWK5 629 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 RPUSD3Q6P087 351 aaKnown RBP16.54■□□□□ 0.24
CLN3-247ENST00000636351 DGAT2L6Q6ZPD8 337 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 ARFGAP2Q8N6H7 521 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 BCORP1Q8N888 145 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 ZNF321PQ8N8H1 164 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 CKAP2Q8WWK9 683 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 SENP5Q96HI0 755 aaPredicted RBP16.54■□□□□ 0.24
CLN3-247ENST00000636351 FBXL20Q96IG2 436 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 EGLN2Q96KS0 407 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 ZNF354BQ96LW1 612 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 BBS4Q96RK4 519 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 BRINP2Q9C0B6 783 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 MEAF6Q9HAF1 191 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 SLC35C2Q9NQQ7 365 aa16.54■□□□□ 0.24
CLN3-247ENST00000636351 NOP53Q9NZM5 478 aaKnown RBP16.54■□□□□ 0.24
CLN3-247ENST00000636351 A0A1B0GUH1 482 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 HNRNPRO43390 633 aaKnown RBP16.53■□□□□ 0.24
CLN3-247ENST00000636351 ZFAND5O76080 213 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 PRPS2P11908 318 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 MEP1AQ16819 746 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 SPRED3Q2MJR0 410 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 ACER2Q5QJU3 275 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 NXNQ6DKJ4 435 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 ANKRD26P1Q6NSI1 321 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 HSDL2Q6YN16 418 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 RNF111Q6ZNA4 994 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 FAM47EQ6ZV65 393 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 WDR75Q8IWA0 830 aaKnown RBP16.53■□□□□ 0.24
CLN3-247ENST00000636351 PIWIL2Q8TC59 973 aaKnown RBP16.53■□□□□ 0.24
CLN3-247ENST00000636351 PPCDCQ96CD2 204 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 CNRIP1Q96F85 164 aaPredicted RBP16.53■□□□□ 0.24
CLN3-247ENST00000636351 MAGEB18Q96M61 343 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 C7orf26Q96N11 449 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 CDCP1Q9H5V8 836 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 CXorf21Q9HAI6 301 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 SLCO1B3Q9NPD5 702 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.53■□□□□ 0.24
CLN3-247ENST00000636351 PLA2G3Q9NZ20 509 aa16.53■□□□□ 0.24
CLN3-247ENST00000636351 PPIEQ9UNP9 301 aaKnown RBP16.53■□□□□ 0.24
CLN3-247ENST00000636351 GOLGA8QA0A0J9YX86 632 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 GOLGA8OA6NCC3 632 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 PRSS44E7EML9 344 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 GOLGA8NF8WBI6 632 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 HRKO00198 91 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 SDHDO14521 159 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 FCHO1O14526 889 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 DYNC1I1O14576 645 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 F10P00742 488 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 LBPP18428 481 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 GALNSP34059 522 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 TDGF1P3P51864 188 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 KCNK10P57789 538 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 EMX2Q04743 252 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 DUSP2Q05923 314 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 LTB4RQ15722 352 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 SP5Q6BEB4 398 aaPredicted RBP16.52■□□□□ 0.24
CLN3-247ENST00000636351 RPS19BP1Q86WX3 136 aaKnown RBP16.52■□□□□ 0.24
CLN3-247ENST00000636351 CCDC116Q8IYX3 515 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 BEST3Q8N1M1 668 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 VWA5B2Q8N398 1253 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 ADCY4Q8NFM4 1077 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.52■□□□□ 0.24
CLN3-247ENST00000636351 ZNF721Q8TF20 911 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 TAAR6Q96RI8 345 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 GAL3ST4Q96RP7 486 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 REEP4Q9H6H4 257 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 STMN3Q9NZ72 180 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 SH3BP4Q9P0V3 963 aa16.52■□□□□ 0.24
CLN3-247ENST00000636351 ZNF223Q9UK11 482 aaPredicted RBP16.52■□□□□ 0.24
CLN3-247ENST00000636351 PDPK1O15530 556 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 WDPCPO95876 746 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 ATP1B1P05026 303 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 CT62P0C5K7 136 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 G6PDP11413 515 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 DDX5P17844 614 aaKnown RBP16.51■□□□□ 0.23
CLN3-247ENST00000636351 EPHA3P29320 983 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 SSTR4P31391 388 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 ST13P50502 369 aaKnown RBP16.51■□□□□ 0.23
CLN3-247ENST00000636351 TNFSF10P50591 281 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 GPR143P51810 404 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 NCBP2P52298 156 aaKnown RBP eCLIP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms