RNA–Protein interactions for RNA: ENST00000636214.1

PNKP-225, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 805 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-225ENST00000636214 CHCHD2Q9Y6H1 151 aaPredicted RBP16.5■□□□□ 0.23
PNKP-225ENST00000636214 DCHS2Q6V1P9 2916 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 CCDC151A5D8V7 595 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 FOXO6A8MYZ6 492 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 HOXD4P09016 255 aaPredicted RBP16.49■□□□□ 0.23
PNKP-225ENST00000636214 CELA3AP09093 270 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 GABRA1P14867 456 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 TSPAN8P19075 237 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 GDF1P27539 372 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 HMOX2P30519 316 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 ALDH9A1P49189 494 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 CLCQ05315 142 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 FUT7Q11130 342 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 LETMD1Q6P1Q0 360 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 LYPD8Q6UX82 237 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 RPS27LQ71UM5 84 aaKnown RBP16.49■□□□□ 0.23
PNKP-225ENST00000636214 CCDC71Q8IV32 467 aaPredicted RBP16.49■□□□□ 0.23
PNKP-225ENST00000636214 VWA5B2Q8N398 1253 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 KLHL29Q96CT2 875 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 FARSBQ9NSD9 589 aaKnown RBP16.49■□□□□ 0.23
PNKP-225ENST00000636214 PCDHA9Q9Y5H5 950 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 NPFFR2Q9Y5X5 522 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 ZNF780BQ9Y6R6 833 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 FREM3P0C091 2139 aa16.49■□□□□ 0.23
PNKP-225ENST00000636214 POLQO75417 2590 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 TACC2O95359 2948 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 CSMD1Q96PZ7 3565 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 NKX2-6A6NCS4 301 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 OR4F21O95013 312 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 LRATO95237 230 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 HSD3B1P14060 373 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 HSD3B2P26439 372 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 TLE4Q04727 773 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 C1orf185Q5T7R7 199 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 SLC48A1Q6P1K1 146 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 TIFABQ6ZNK6 161 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 PACS2Q86VP3 889 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 SLC22A9Q8IVM8 553 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 RPRMLQ8N4K4 120 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 CDYL2Q8N8U2 506 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 C17orf47Q8NEP4 570 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 UCN3Q969E3 161 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 C14orf79Q96F83 325 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 C1QTNF3Q9BXJ4 246 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 ENKD1Q9H0I2 346 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 SLC24A3Q9HC58 644 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 TNFRSF10DQ9UBN6 386 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 VPS29Q9UBQ0 182 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 BCAP29Q9UHQ4 241 aa16.48■□□□□ 0.23
PNKP-225ENST00000636214 CNOT11Q9UKZ1 510 aaKnown RBP16.48■□□□□ 0.23
PNKP-225ENST00000636214 ANKRD17O75179 2603 aaKnown RBP16.47■□□□□ 0.23
PNKP-225ENST00000636214 C15orf38-AP3S2A0A0A6YYH1 394 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 A0A1W2PS29 197 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 CDH16O75309 829 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 TRAPPC6AO75865 159 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 SNX4O95219 450 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 CT62P0C5K7 136 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 CSNK2A2P19784 350 aaPredicted RBP16.47■□□□□ 0.23
PNKP-225ENST00000636214 CAPN3P20807 821 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 ATP5F1P24539 256 aaPredicted RBP16.47■□□□□ 0.23
PNKP-225ENST00000636214 HSD17B3P37058 310 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 FEN1P39748 380 aaKnown RBP16.47■□□□□ 0.23
PNKP-225ENST00000636214 ZFP36L2P47974 494 aaKnown RBP16.47■□□□□ 0.23
PNKP-225ENST00000636214 FBXW4P57775 412 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 TRA2BP62995 288 aaKnown RBP16.47■□□□□ 0.23
PNKP-225ENST00000636214 ADGRD1Q6QNK2 874 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 TMEM64Q6YI46 380 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 GPRIN3Q6ZVF9 776 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 LRRC25Q8N386 305 aaPredicted RBP16.47■□□□□ 0.23
PNKP-225ENST00000636214 C1orf52Q8N6N3 182 aaKnown RBP16.47■□□□□ 0.23
PNKP-225ENST00000636214 ZNF441Q8N8Z8 693 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 METTL6Q8TCB7 284 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 ZNF382Q96SR6 550 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 SECISBP2Q96T21 854 aaKnown RBP16.47■□□□□ 0.23
PNKP-225ENST00000636214 TTYH2Q9BSA4 534 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 GIMAP4Q9NUV9 329 aa16.47■□□□□ 0.23
PNKP-225ENST00000636214 PSMC3IPQ9P2W1 217 aaPredicted RBP16.47■□□□□ 0.23
PNKP-225ENST00000636214 ANKRD33BA6NCL7 494 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 LRRC3CA6NJW4 275 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 MANBAO00462 879 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 PPP6CO00743 305 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 RIPK2O43353 540 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 ULK1O75385 1050 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 CLPSP04118 112 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 RFPL3SP0C7P2 107 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 GCKP35557 465 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 TRPC1P48995 793 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 CSTF3Q12996 717 aaKnown RBP16.46■□□□□ 0.23
PNKP-225ENST00000636214 TOMM20Q15388 145 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 ZNF678Q5SXM1 525 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 PRR22Q8IZ63 422 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 ZNF295-AS1Q8N0V1 137 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 CLYBLQ8N0X4 340 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 NEIL3Q8TAT5 605 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 SPPL2AQ8TCT8 520 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 ACMSDQ8TDX5 336 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 RILPQ96NA2 401 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 HBEGFQ99075 208 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 UCK2Q9BZX2 261 aa16.46■□□□□ 0.23
PNKP-225ENST00000636214 SLC6A15Q9H2J7 730 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms