RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 OLAHQ9NV23 265 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 PTGFRNQ9P2B2 879 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 TRPC4Q9UBN4 977 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 DMXL1Q9Y485 3027 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 A0A087WV62 115 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 PLOD3O60568 738 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 NME6O75414 186 aaPredicted RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 GMNNO75496 209 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 TFPTP0C1Z6 253 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 UMPSP11172 480 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 CCL4P13236 92 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 MATN1P21941 496 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 FBLP22087 321 aaKnown RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 MAGEA8P43361 318 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 PRKAG1P54619 331 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 INSM1Q01101 510 aaPredicted RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 ILKQ13418 452 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 IL11RAQ14626 422 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 LASP1Q14847 261 aaKnown RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 MYBPC3Q14896 1274 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 NKG7Q16617 165 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 BHLHB9Q6PI77 547 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 RBM44Q6ZP01 1051 aaKnown RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 SZRD1Q7Z422 152 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 GALNT10Q86SR1 603 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 BPHLQ86WA6 291 aaPredicted RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 TMEM126BQ8IUX1 230 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 ZC3H7AQ8IWR0 971 aaKnown RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 ST13P4Q8IZP2 240 aaPredicted RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 OR5D16Q8NGK9 328 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 DOK4Q8TEW6 326 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 RAB8BQ92930 207 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 NCLNQ969V3 563 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 FAM162AQ96A26 154 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 CDC6Q99741 560 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 OR51I1Q9H343 314 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 A4GALTQ9NPC4 353 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 RIMS3Q9UJD0 308 aa13.35□□□□□ -0.27
USP39-220ENST00000613444 C19orf53Q9UNZ5 99 aaPredicted RBP13.35□□□□□ -0.27
USP39-220ENST00000613444 IGKV3D-11A0A0A0MRZ8 115 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 TMEM229AB2RXF0 380 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 SLITRK5O94991 958 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 BAG2O95816 211 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 ONECUT2O95948 504 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 SERPINA1P01009 418 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 S1PR1P21453 382 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 NT5EP21589 574 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 GCKP35557 465 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 PRIM2P49643 509 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 PCBP3P57721 371 aaKnown RBP13.34□□□□□ -0.27
USP39-220ENST00000613444 CDK6Q00534 326 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 MC2RQ01718 297 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 SCARB2Q14108 478 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 ZNF630Q2M218 657 aaPredicted RBP13.34□□□□□ -0.27
USP39-220ENST00000613444 VWA2Q5GFL6 755 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 EXOSC6Q5RKV6 272 aaKnown RBP13.34□□□□□ -0.27
USP39-220ENST00000613444 ARHGAP40Q5TG30 622 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 ENPP6Q6UWR7 440 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 PQLC1Q8N2U9 271 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 NFKBIDQ8NI38 313 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 SLC38A5Q8WUX1 472 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 CTRCQ99895 268 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 ALOXE3Q9BYJ1 711 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 CXorf21Q9HAI6 301 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 DDX18Q9NVP1 670 aaKnown RBP13.34□□□□□ -0.27
USP39-220ENST00000613444 ZNF639Q9UID6 485 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 ANAPC2Q9UJX6 822 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 MMACHCQ9Y4U1 282 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 NINQ8N4C6 2090 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 RIF1Q5UIP0 2472 aaKnown RBP13.34□□□□□ -0.27
USP39-220ENST00000613444 IGLV3-12A0A075B6K2 115 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 RFPL3O75679 317 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 OR12D1P0DN82 309 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 IL10P22301 178 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 PSMA4P25789 261 aaKnown RBP13.34□□□□□ -0.27
USP39-220ENST00000613444 RORAP35398 523 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 SESN3P58005 492 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 RHAGQ02094 409 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 STX4Q12846 297 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 MAP4K2Q12851 820 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 CDCP2Q5VXM1 449 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 CCDC80Q76M96 950 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 LGI4Q8N135 537 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 FBXO30Q8TB52 745 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 PKP2Q99959 881 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 YIPF4Q9BSR8 244 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 FBXO8Q9NRD0 319 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 ANGPTL2Q9UKU9 493 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 AURKCQ9UQB9 309 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 V9GYQ6 96 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 KNTC1P50748 2209 aa13.34□□□□□ -0.27
USP39-220ENST00000613444 PRKD3O94806 890 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 CBX7O95931 251 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 ATXN8OSP0DMR3 200 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 STT3AP46977 705 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 PTDSS1P48651 473 aaKnown RBP13.33□□□□□ -0.28
USP39-220ENST00000613444 E2F1Q01094 437 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 FUT5Q11128 374 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 DUSP8Q13202 625 aa13.33□□□□□ -0.28
USP39-220ENST00000613444 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms