RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 LAPTM4BQ86VI4 370 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 SLC30A8Q8IWU4 369 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 OR4F15Q8NGB8 312 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 OR52P1PQ8NH57 321 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 PDXPQ96GD0 296 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 LRRC3BQ96PB8 259 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 BBS4Q96RK4 519 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 DCLRE1CQ96SD1 692 aaKnown RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 ZDHHC5Q9C0B5 715 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 RPL36Q9Y3U8 105 aaKnown RBP13.3□□□□□ -0.28
COL6A1-207ENST00000612273 CMAHPQ9Y471 501 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 OR1A2Q9Y585 309 aa13.3□□□□□ -0.28
COL6A1-207ENST00000612273 HELZP42694 1942 aaKnown RBP13.29□□□□□ -0.28
COL6A1-207ENST00000612273 FAM183AA6NL82 134 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 TBX6O95947 436 aaPredicted RBP13.29□□□□□ -0.28
COL6A1-207ENST00000612273 SOD1P00441 154 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 LIMS1P48059 325 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 NCBP2P52298 156 aaKnown RBP eCLIP13.29□□□□□ -0.28
COL6A1-207ENST00000612273 KHDRBS2Q5VWX1 349 aaKnown RBP13.29□□□□□ -0.28
COL6A1-207ENST00000612273 UBQLNLQ8IYU4 475 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 KRT78Q8N1N4 520 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 OR8J1Q8NGP2 316 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 GOT1L1Q8NHS2 421 aaPredicted RBP13.29□□□□□ -0.28
COL6A1-207ENST00000612273 MND1Q9BWT6 205 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 STUB1Q9UNE7 303 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 SCN2AQ99250 2005 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 PRRT4C9JH25 899 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 PI15O43692 258 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 CPNE3O75131 537 aaKnown RBP13.29□□□□□ -0.28
COL6A1-207ENST00000612273 ADAP00813 363 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 CELP19835 753 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 DDCP20711 480 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 ITGB8P26012 769 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 GIPRP48546 466 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 PDE7AQ13946 482 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 FLYWCH1Q4VC44 716 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 SYT14P1Q58G82 188 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 OR52I1Q8NGK6 324 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 ENKURQ8TC29 256 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 ZFPM2Q8WW38 1151 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 TMCO6Q96DC7 493 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 DTD2Q96FN9 168 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 CAPNS2Q96L46 248 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 CAPN10Q9HC96 672 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 IRAK3Q9Y616 596 aa13.29□□□□□ -0.28
COL6A1-207ENST00000612273 SH3D21A4FU49 640 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 QSOX1O00391 747 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 TSC22D2O75157 780 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 PCDH8O95206 1070 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 MAN2A2P49641 1150 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 SLC16A1P53985 500 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 CLDN2P57739 230 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 KRR1Q13601 381 aaKnown RBP13.28□□□□□ -0.28
COL6A1-207ENST00000612273 P2RY14Q15391 338 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 SMARCD3Q6STE5 483 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 OR8K5Q8NH50 307 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 RAD51AP1Q96B01 352 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 ARRDC3Q96B67 414 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 EFHD2Q96C19 240 aaPredicted RBP13.28□□□□□ -0.28
COL6A1-207ENST00000612273 MTERF3Q96E29 417 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 TAPBPLQ9BX59 468 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 SGPP1Q9BX95 441 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 TTTY10Q9BZA0 68 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 CNOT2Q9NZN8 540 aaKnown RBP13.28□□□□□ -0.28
COL6A1-207ENST00000612273 THSD7BQ9C0I4 1608 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 OR6C70A6NIJ9 312 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 CD8B2A6NJW9 211 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 FOXE1O00358 373 aaPredicted RBP13.28□□□□□ -0.28
COL6A1-207ENST00000612273 CAPN5O15484 640 aaPredicted RBP13.28□□□□□ -0.28
COL6A1-207ENST00000612273 CD8BP10966 210 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 LAG3P18627 525 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 S100A1P23297 94 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 HMGA2P52926 109 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 PSPHP78330 225 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 SCN1BQ07699 218 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 DPPA4Q7L190 304 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 FAM46AQ96IP4 442 aaKnown RBP13.28□□□□□ -0.28
COL6A1-207ENST00000612273 CITED4Q96RK1 184 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 ZNF607Q96SK3 696 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 KLHL31Q9H511 634 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 AHSPQ9NZD4 102 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 SEC14L4Q9UDX3 406 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 TRBV23OR9-2A0A075B6M9 112 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 SERTM1A2A2V5 107 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 E9PQ18 207 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 MPZL2O60487 215 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 RB1P06400 928 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 ADH1AP07327 375 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 GPR4P46093 362 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 RFX3P48380 749 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 ILKQ13418 452 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 KRT33BQ14525 404 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 TMEM107Q6UX40 140 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 TRIM69Q86WT6 500 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 C12orf76Q8N812 135 aaPredicted RBP13.28□□□□□ -0.28
COL6A1-207ENST00000612273 RNFT2Q96EX2 444 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 ST6GAL2Q96JF0 529 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 MIXL1Q9H2W2 232 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 SLC25A19Q9HC21 320 aa13.28□□□□□ -0.28
COL6A1-207ENST00000612273 NLKQ9UBE8 527 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms