RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 C2orf72A6NCS6 295 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 HSPB2A8KAH6 182 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 FAM47E-STBD1D6RA91 191 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 ERAL1O75616 437 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 DNAJA1P31689 397 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 DEKP35659 375 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 FEN1P39748 380 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 ARFIP1P53367 373 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 NRG3P56975 720 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 RPS6KA2Q15349 733 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 HSPB2Q16082 182 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 FRG2Q64ET8 278 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 SPNS3Q6ZMD2 512 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 MILR1Q7Z6M3 343 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 PACS2Q86VP3 889 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 TNIP2Q8NFZ5 429 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 SPPL2AQ8TCT8 520 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 FRG2BQ96QU4 278 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 GPATCH1Q9BRR8 931 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 SLC24A3Q9HC58 644 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 ACKR4Q9NPB9 350 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 SLC12A4Q9UP95 1085 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 IKBKGQ9Y6K9 419 aa16.12■□□□□ 0.17
SHKBP1-223ENST00000600552 POC1B-GALNT4F8VUJ3 575 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 TRIM3O75382 744 aaPredicted RBP16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 INHBAP08476 426 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 RBP1P09455 135 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 CPMP14384 443 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 CD1EP15812 388 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 AGFG1P52594 562 aaKnown RBP16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 MAPK12P53778 367 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 EXOSC7Q15024 291 aaKnown RBP16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 EIPR1Q53HC9 387 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 TEX35Q5T0J7 233 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 DESI1Q6ICB0 168 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 FAM111BQ6SJ93 734 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 SEM1Q6ZVN7 128 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 MMP21Q8N119 569 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 ZNF441Q8N8Z8 693 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 ADCY4Q8NFM4 1077 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 IFT81Q8WYA0 676 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 TP53INP1Q96A56 240 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 EPB41L4BQ9H329 900 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 LIME1Q9H400 295 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 ELOVL6Q9H5J4 265 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 METTL7AQ9H8H3 244 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 FARSBQ9NSD9 589 aaKnown RBP16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 ZDHHC18Q9NUE0 388 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 QPCTLQ9NXS2 382 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 XPR1Q9UBH6 696 aa16.11■□□□□ 0.17
SHKBP1-223ENST00000600552 SETD2Q9BYW2 2564 aaPredicted RBP16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 CCDC189A1A4V9 331 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 DVL2O14641 736 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 SEMA3DO95025 777 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 PORP16435 677 aaPredicted RBP16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 GALNSP34059 522 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 ALDH9A1P49189 494 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 IST1P53990 364 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 CDH13P55290 713 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 CKAP4Q07065 602 aaKnown RBP16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 ACSF3Q4G176 576 aaPredicted RBP16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 WIPI1Q5MNZ9 446 aaPredicted RBP16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 TBCELQ5QJ74 424 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 FBXW10Q5XX13 1052 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 FAM180BQ6P0A1 224 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 PAGE2Q7Z2X7 111 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 YRDCQ86U90 279 aaKnown RBP16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 ZNF615Q8N8J6 731 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 NAXEQ8NCW5 288 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 OR4F6Q8NGB9 312 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 TRIB1Q96RU8 372 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 TIMP4Q99727 224 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 ACSS3Q9H6R3 686 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 PFDN4Q9NQP4 134 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 CCM2LQ9NUG4 571 aaPredicted RBP16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 PSD3Q9NYI0 1048 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 EHD3Q9NZN3 535 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 CRIM1Q9NZV1 1036 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 MTRF1LQ9UGC7 380 aaKnown RBP16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 PCTPQ9UKL6 214 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 DTX4Q9Y2E6 619 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 MPDZO75970 2070 aa16.1■□□□□ 0.17
SHKBP1-223ENST00000600552 PRRC2AP48634 2157 aaKnown RBP16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 AHRRA9YTQ3 701 aa16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 URI1O94763 535 aaPredicted RBP16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 SNX4O95219 450 aa16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 ESRRBO95718 433 aa16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 IL2RAP01589 272 aa16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 CASP3P42574 277 aa16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 TMED10P49755 219 aaKnown RBP16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 CDK9P50750 372 aaKnown RBP16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 RPP38P78345 283 aaKnown RBP16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 CRYZQ08257 329 aaKnown RBP16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 FUT7Q11130 342 aa16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 TRAF3Q13114 568 aa16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 ANGPTL8Q6UXH0 198 aa16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 RELL2Q8NC24 303 aaPredicted RBP16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 RDH11Q8TC12 318 aa16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 SELENOMQ8WWX9 145 aa16.09■□□□□ 0.17
SHKBP1-223ENST00000600552 ADIPOR1Q96A54 375 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms