RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 TRPC5OSA6NMA1 111 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 H0YGG7 62 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 SLC28A1O00337 649 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 SDHDO14521 159 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 SKAP2O75563 359 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 ETHE1O95571 254 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 SERPINA6P08185 405 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 LINC00032P0C843 101 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 NR0B1P51843 470 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 ARF3P61204 181 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 RPS13P62277 151 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 CUL3Q13618 768 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 PDCD2Q16342 344 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 MINDY4Q4G0A6 757 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 FLYWCH1Q4VC44 716 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 SGO1Q5FBB7 561 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 DEPDC1Q5TB30 811 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 SHEQ5VZ18 495 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 H3F3CQ6NXT2 135 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 SCIMPQ6UWF3 145 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 CPEB2Q7Z5Q1 589 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 ASPGQ86U10 573 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 LIX1LQ8IVB5 337 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 ARHGEF39Q8N4T4 335 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 OR5M9Q8NGP3 310 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 OR2T11Q8NH01 316 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 RFWD2Q8NHY2 731 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 NUF2Q9BZD4 464 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 ACPTQ9BZG2 426 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 MKKSQ9NPJ1 570 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 PFDN4Q9NQP4 134 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 KLHL14Q9P2G3 628 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 CDC14AQ9UNH5 594 aa12.9□□□□□ -0.34
SHKBP1-218ENST00000598907 SCN2AQ99250 2005 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 A0A0A6YYC8 382 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 LRIT2A6NDA9 550 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 I3L1I5 382 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 P2RX6O15547 441 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 SMIM10L1P0DMW3 83 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 TROVE2P10155 538 aaKnown RBP eCLIP12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 PTX3P26022 381 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 ZFP36L2P47974 494 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 IDH3AP50213 366 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 ARFIP1P53367 373 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 AQP5P55064 265 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 PHEXP78562 749 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 PRTGQ2VWP7 1150 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 SLC9B1Q4ZJI4 515 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 LARP4Q71RC2 724 aaKnown RBP eCLIP12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 PIGWQ7Z7B1 504 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 DDIASQ8IXT1 998 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 SLC5A8Q8N695 610 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 CAMKVQ8NCB2 501 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 SLC13A3Q8WWT9 602 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 C11orf24Q96F05 449 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 CMTM7Q96FZ5 175 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 SMIM10Q96HG1 83 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 Q96MF0 132 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 CCT8L2Q96SF2 557 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 HBEGFQ99075 208 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 SERPINI1Q99574 410 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 VN1R1Q9GZP7 353 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 NPHS2Q9NP85 383 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 PNPLA3Q9NST1 481 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 SIRT5Q9NXA8 310 aa12.89□□□□□ -0.35
SHKBP1-218ENST00000598907 A0A0G2JNJ9 132 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 NPIPA2E9PIF3 369 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 NPIPA3F8WFD2 350 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 TXNDC9O14530 226 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 LSM1O15116 133 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 RGS14O43566 566 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 SNX3O60493 162 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 RSL1D1O76021 490 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 FAM107AO95990 144 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 TGFB1P01137 390 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 HNRNPH1P31943 449 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 EMP3P54852 163 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 HMGCS1Q01581 520 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 TBL3Q12788 808 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 DDX39BQ13838 428 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 KIAA0040Q15053 153 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 HKDC1Q2TB90 917 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 KHDRBS2Q5VWX1 349 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 ZNF585AQ6P3V2 769 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 ARHGAP11AQ6P4F7 1023 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 UBE3DQ7Z6J8 389 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 CPLX4Q7Z7G2 160 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 P3H2Q8IVL5 708 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 ACTRT2Q8TDY3 377 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 C10orf82Q8WW14 230 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 RERGQ96A58 199 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 TMEM125Q96AQ2 219 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 MS4A6EQ96DS6 147 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 THOC1Q96FV9 657 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 METTL2AQ96IZ6 378 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 MACROD1Q9BQ69 325 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 EBF4Q9BQW3 602 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 NSRP1Q9H0G5 558 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 DEFB127Q9H1M4 99 aa12.88□□□□□ -0.35
SHKBP1-218ENST00000598907 KLHL31Q9H511 634 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms