RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 OR7G2Q8NG99 324 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 OR52N2Q8NGI0 321 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 RIT1Q92963 219 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 SLC35G5Q96KT7 338 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 KCTD14Q9BQ13 255 aaPredicted RBP13.71□□□□□ -0.21
VRK3-212ENST00000596814 B3GNT4Q9C0J1 378 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 POLR1BQ9H9Y6 1135 aa13.71□□□□□ -0.21
VRK3-212ENST00000596814 SUCOQ9UBS9 1254 aaKnown RBP13.71□□□□□ -0.21
VRK3-212ENST00000596814 RRP15Q9Y3B9 282 aaKnown RBP13.71□□□□□ -0.21
VRK3-212ENST00000596814 TCRBV16S1A1N1A0A5B0 115 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 IDSB3KWA1 339 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CIB2O75838 187 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CT62P0C5K7 136 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CCNYL3P0C7X3 344 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 GPX2P18283 190 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 GALNSP34059 522 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 FOXL2P58012 376 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 FADDQ13158 208 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 NCF4Q15080 339 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 FAM111BQ6SJ93 734 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 DGAT2L6Q6ZPD8 337 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 C6orf120Q7Z4R8 191 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 IFNEQ86WN2 208 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 C10orf111Q8N326 155 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 OR2L13Q8N349 312 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 VWA5B2Q8N398 1253 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 NUP43Q8NFH3 380 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 SPRY4Q9C004 299 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 PIF1Q9H611 641 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CXorf21Q9HAI6 301 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 ADAP2Q9NPF8 381 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 PNO1Q9NRX1 252 aaKnown RBP13.7□□□□□ -0.22
VRK3-212ENST00000596814 GMPR2Q9P2T1 348 aaKnown RBP13.7□□□□□ -0.22
VRK3-212ENST00000596814 PADI1Q9ULC6 663 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 A0A087WV62 115 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 FAM220BPB1ANY3 271 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 UPK1AO00322 258 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 PLOD3O60568 738 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CYC1P08574 325 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 SLC5A2P31639 672 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CRATP43155 626 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 MVDP53602 400 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 PRKAG1P54619 331 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CORO7P57737 925 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 MGAT2Q10469 447 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 MAP4K2Q12851 820 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 RGNQ15493 299 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CYP51A1Q16850 503 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 COX20Q5RI15 118 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 FHL5Q5TD97 284 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 TIPARPQ7Z3E1 657 aaKnown RBP13.7□□□□□ -0.22
VRK3-212ENST00000596814 SERPINA11Q86U17 422 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CALHM3Q86XJ0 350 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 OR2T12Q8NG77 320 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 DOK4Q8TEW6 326 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CTHRC1Q96CG8 243 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 ZNF583Q96ND8 569 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 MS4A4EQ96PG1 132 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 CRB3Q9BUF7 120 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 ANKRA2Q9H9E1 313 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 GPATCH2Q9NW75 528 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 NTMQ9P121 344 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 C3orf18Q9UK00 162 aa13.7□□□□□ -0.22
VRK3-212ENST00000596814 DCDC2BA2VCK2 349 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 ALOX12BO75342 701 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 ETFAP13804 333 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 TNNI3P19429 210 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 MSX2P35548 267 aaPredicted RBP13.69□□□□□ -0.22
VRK3-212ENST00000596814 SOX18P35713 384 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 EMP2P54851 167 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 CASP9P55211 416 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 RPS26P62854 115 aaKnown RBP13.69□□□□□ -0.22
VRK3-212ENST00000596814 BNIP2Q12982 314 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 MAP7Q14244 749 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 LASP1Q14847 261 aaKnown RBP13.69□□□□□ -0.22
VRK3-212ENST00000596814 ELAVL1Q15717 326 aaKnown RBP13.69□□□□□ -0.22
VRK3-212ENST00000596814 TRMT12Q53H54 448 aaKnown RBP13.69□□□□□ -0.22
VRK3-212ENST00000596814 LANCL3Q6ZV70 420 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 ESX1Q8N693 406 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 FAM13CQ8NE31 585 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 METTL21AQ8WXB1 218 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 REXO5Q96IC2 774 aaKnown RBP13.69□□□□□ -0.22
VRK3-212ENST00000596814 ZNF578Q96N58 590 aaPredicted RBP13.69□□□□□ -0.22
VRK3-212ENST00000596814 SPATA9Q9BWV2 254 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 EQTNQ9NQ60 294 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 C19orf53Q9UNZ5 99 aaPredicted RBP13.69□□□□□ -0.22
VRK3-212ENST00000596814 USP22Q9UPT9 525 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 POMPQ9Y244 141 aa13.69□□□□□ -0.22
VRK3-212ENST00000596814 C17orf105B2RV13 164 aa13.68□□□□□ -0.22
VRK3-212ENST00000596814 DYRK3O43781 588 aa13.68□□□□□ -0.22
VRK3-212ENST00000596814 COQ9O75208 318 aa13.68□□□□□ -0.22
VRK3-212ENST00000596814 HMGN2P05204 90 aaKnown RBP13.68□□□□□ -0.22
VRK3-212ENST00000596814 CD63P08962 238 aa13.68□□□□□ -0.22
VRK3-212ENST00000596814 HTR1EP28566 365 aa13.68□□□□□ -0.22
VRK3-212ENST00000596814 RBMS1P29558 406 aaKnown RBP13.68□□□□□ -0.22
VRK3-212ENST00000596814 KHKP50053 298 aa13.68□□□□□ -0.22
VRK3-212ENST00000596814 GZMMP51124 257 aa13.68□□□□□ -0.22
VRK3-212ENST00000596814 PGDP52209 483 aa13.68□□□□□ -0.22
VRK3-212ENST00000596814 OR4D2P58180 307 aa13.68□□□□□ -0.22
VRK3-212ENST00000596814 TRIM25Q14258 630 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms