RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 MYOCOSA0A1B0GUC4 107 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 CASC3O15234 703 aaKnown RBP13.34□□□□□ -0.27
LIG3-205ENST00000585941 PIGAP37287 484 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 HLCSP50747 726 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 PPP1CAP62136 330 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 ESRRGP62508 458 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 SYPL1Q16563 259 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 MICAQ29983 383 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 NADK2Q4G0N4 442 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 DGLUCYQ7Z3D6 616 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 ZNF605Q86T29 641 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 TMEFF1Q8IYR6 380 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 CARFQ8N187 725 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 DNAJC22Q8N4W6 341 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 OR5D16Q8NGK9 328 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 ADAMTS18Q8TE60 1221 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 DGCR14Q96DF8 476 aaKnown RBP13.34□□□□□ -0.27
LIG3-205ENST00000585941 TRNT1Q96Q11 434 aaKnown RBP13.34□□□□□ -0.27
LIG3-205ENST00000585941 OR7D2Q96RA2 312 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 BARD1Q99728 777 aaKnown RBP13.34□□□□□ -0.27
LIG3-205ENST00000585941 IL21RQ9HBE5 538 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 KCND3Q9UK17 655 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 CSNK1G3Q9Y6M4 447 aa13.34□□□□□ -0.27
LIG3-205ENST00000585941 NINQ8N4C6 2090 aa13.33□□□□□ -0.27
LIG3-205ENST00000585941 A0A087WV62 115 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 TLCD2A6NGC4 264 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 SLC9B1P1A6NJY1 282 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 CYR61O00622 381 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 PIAS2O75928 621 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 GADD45GO95257 159 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 GPR75O95800 540 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 ATP1B1P05026 303 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 ALPPL2P10696 532 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 TNFRSF1BP20333 461 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 BCKDHBP21953 392 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 ALDH3B2P48448 385 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 CDH12P55289 794 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 RAB38P57729 211 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 SIM1P81133 766 aaPredicted RBP13.33□□□□□ -0.28
LIG3-205ENST00000585941 MLLT1Q03111 559 aaPredicted RBP13.33□□□□□ -0.28
LIG3-205ENST00000585941 PRTGQ2VWP7 1150 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 TSPYL5Q86VY4 417 aaPredicted RBP13.33□□□□□ -0.28
LIG3-205ENST00000585941 CA13Q8N1Q1 262 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 OR2L13Q8N349 312 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 TTC29Q8NA56 475 aaPredicted RBP13.33□□□□□ -0.28
LIG3-205ENST00000585941 OR10G2Q8NGC3 310 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 ADAMTS15Q8TE58 950 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 PHF10Q8WUB8 498 aaKnown RBP13.33□□□□□ -0.28
LIG3-205ENST00000585941 ZDHHC12Q96GR4 267 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 CSF3RQ99062 836 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 GABARAPL3Q9BY60 117 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 RIBC2Q9H4K1 309 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 FAM60AQ9NP50 221 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 ACER3Q9NUN7 267 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 GIN1Q9NXP7 522 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 SLC9A8Q9Y2E8 581 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 POFUT2Q9Y2G5 429 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 MRPS2Q9Y399 296 aaKnown RBP13.33□□□□□ -0.28
LIG3-205ENST00000585941 PCDHGA8Q9Y5G5 932 aa13.33□□□□□ -0.28
LIG3-205ENST00000585941 THADAQ6YHU6 1953 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 PRAMEF27A3QJZ7 478 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 PRAMEF25A6NGN4 478 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 RHPN2P1A8MT19 583 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 SOX30O94993 753 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 TTKP33981 857 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 LIMS1P48059 325 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 MAN2A2P49641 1150 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 CSNK1EP49674 416 aaKnown RBP13.32□□□□□ -0.28
LIG3-205ENST00000585941 GABARAPL2P60520 117 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 ISL1P61371 349 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 PUM1Q14671 1186 aaKnown RBP eCLIP13.32□□□□□ -0.28
LIG3-205ENST00000585941 LAPTM4AQ15012 233 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 FAM214AQ32MH5 1076 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 GPAT3Q53EU6 434 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 COLEC12Q5KU26 742 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 C6orf141Q5SZD1 244 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 GARNL3Q5VVW2 1013 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 ANKRD34AQ69YU3 496 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 CDC73Q6P1J9 531 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 ZCCHC12Q6PEW1 402 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 FAM92BQ6ZTR7 304 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 GALNT5Q7Z7M9 940 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 ARHGEF39Q8N4T4 335 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 GPR32P1Q8NGA4 272 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 FBLIM1Q8WUP2 373 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 NR4A3Q92570 626 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 COL26A1Q96A83 441 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 PINK1Q9BXM7 581 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 ZNF556Q9HAH1 456 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 VCX3AQ9NNX9 186 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 PLCL2Q9UPR0 1127 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 HCN4Q9Y3Q4 1203 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 GMPPBQ9Y5P6 360 aa13.32□□□□□ -0.28
LIG3-205ENST00000585941 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 A0A1B0GTW7 788 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 A0A1W2PS29 197 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 ZNF860A6NHJ4 632 aa13.31□□□□□ -0.28
LIG3-205ENST00000585941 MITFO75030 526 aaPredicted RBP13.31□□□□□ -0.28
LIG3-205ENST00000585941 CCNB2O95067 398 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms