RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ACKR4Q9NPB9 350 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 ADAM29Q9UKF5 820 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 SNX6Q9UNH7 406 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 FAM215AQ9Y5M1 114 aa18.82■□□□□ 0.6
SHMT1-209ENST00000582653 HCFC1P51610 2035 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 PHF3Q92576 2039 aaKnown RBP18.81■□□□□ 0.6
SHMT1-209ENST00000582653 TRGV5A0A0B4J1U4 118 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 DLX3O60479 287 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 SUPT7LO94864 414 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 ABHD2P08910 425 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 CPMP14384 443 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 NT5EP21589 574 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 ZFP36L2P47974 494 aaKnown RBP18.81■□□□□ 0.6
SHMT1-209ENST00000582653 FUT7Q11130 342 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 UNC50Q53HI1 259 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 C10orf62Q5T681 223 aaPredicted RBP18.81■□□□□ 0.6
SHMT1-209ENST00000582653 TRMT10CQ7L0Y3 403 aaKnown RBP18.81■□□□□ 0.6
SHMT1-209ENST00000582653 IFT20Q8IY31 132 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 FBXW8Q8N3Y1 598 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 CEP112Q8N8E3 955 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 ZNF615Q8N8J6 731 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 ZNF441Q8N8Z8 693 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 MYRIPQ8NFW9 859 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 TM4SF18Q96CE8 201 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 OR10A5Q9H207 317 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 EXO5Q9H790 373 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 QPCTLQ9NXS2 382 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 CES1P1Q9UKY3 287 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 CNOT11Q9UKZ1 510 aaKnown RBP18.81■□□□□ 0.6
SHMT1-209ENST00000582653 BOKQ9UMX3 212 aaPredicted RBP18.81■□□□□ 0.6
SHMT1-209ENST00000582653 PCDHGB3Q9Y5G1 929 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 PCDHA9Q9Y5H5 950 aa18.81■□□□□ 0.6
SHMT1-209ENST00000582653 DNAJC13O75165 2243 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 LRRC3CA6NJW4 275 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 GOLGA8RI6L899 631 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 RHOXF2BP0C7M4 288 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 CHN1P15882 459 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 PORP16435 677 aaPredicted RBP18.8■□□□□ 0.6
SHMT1-209ENST00000582653 FEN1P39748 380 aaKnown RBP18.8■□□□□ 0.6
SHMT1-209ENST00000582653 FBXW4P57775 412 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 TESK1Q15569 626 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 NTRK2Q16620 822 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 ZNF678Q5SXM1 525 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 HLA-DQA1Q5Y7H0 255 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 FAM180BQ6P0A1 224 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 SLC48A1Q6P1K1 146 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 FAM111BQ6SJ93 734 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 TAGAPQ8N103 731 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 LRRC25Q8N386 305 aaPredicted RBP18.8■□□□□ 0.6
SHMT1-209ENST00000582653 CDYL2Q8N8U2 506 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 TP53INP1Q96A56 240 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 MTBPQ96DY7 904 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 TMEM237Q96Q45 408 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 RHOXF2Q9BQY4 288 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 ZNF703Q9H7S9 590 aaPredicted RBP18.8■□□□□ 0.6
SHMT1-209ENST00000582653 BRF2Q9HAW0 419 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 SLC24A3Q9HC58 644 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 SPRR3Q9UBC9 169 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 TRPS1Q9UHF7 1281 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 NPFFR2Q9Y5X5 522 aa18.8■□□□□ 0.6
SHMT1-209ENST00000582653 A0A0G2JNJ9 132 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 C1orf226A1L170 272 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 ANKRD33BA6NCL7 494 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 KIF2AO00139 706 aaPredicted RBP18.79■□□□□ 0.6
SHMT1-209ENST00000582653 MANBAO00462 879 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 ERAL1O75616 437 aaKnown RBP18.79■□□□□ 0.6
SHMT1-209ENST00000582653 GABRA1P14867 456 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 TAC1P20366 129 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 ENDOUP21128 410 aaKnown RBP18.79■□□□□ 0.6
SHMT1-209ENST00000582653 S1PR1P21453 382 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 DUSP2Q05923 314 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 SLC29A2Q14542 456 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 BICRALQ6AI39 1079 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 CDH24Q86UP0 819 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 PRR22Q8IZ63 422 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 CLYBLQ8N0X4 340 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 C1orf52Q8N6N3 182 aaKnown RBP18.79■□□□□ 0.6
SHMT1-209ENST00000582653 SIMC1Q8NDZ2 872 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 DIO2Q92813 273 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 ADIPOR1Q96A54 375 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 DOHHQ9BU89 302 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 ALKBH4Q9NXW9 302 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 Q9UFV3 132 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 KCNN3Q9UGI6 736 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 DTX4Q9Y2E6 619 aa18.79■□□□□ 0.6
SHMT1-209ENST00000582653 CAPN14A8MX76 684 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 FAM47E-STBD1D6RA91 191 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 GUCY1B2O75343 617 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 DEKP35659 375 aaKnown RBP18.78■□□□□ 0.6
SHMT1-209ENST00000582653 TRPC1P48995 793 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 MGAT2Q10469 447 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 PRICKLE4Q2TBC4 344 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 C1orf185Q5T7R7 199 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 CES4AQ5XG92 561 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 LIX1LQ8IVB5 337 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 GSPT2Q8IYD1 628 aaKnown RBP18.78■□□□□ 0.6
SHMT1-209ENST00000582653 ADCY4Q8NFM4 1077 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 TXLNGYQ9BZA5 131 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 BRINP2Q9C0B6 783 aa18.78■□□□□ 0.6
SHMT1-209ENST00000582653 SLC6A15Q9H2J7 730 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms