RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ZNF750Q32MQ0 723 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 VWA2Q5GFL6 755 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 MTX3Q5HYI7 312 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 FHL5Q5TD97 284 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 C1orf146Q5VVC0 180 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 TMEM107Q6UX40 140 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 VWA5B2Q8N398 1253 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 OR10A6Q8NH74 314 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 OR14A16Q8NHC5 309 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 DAZLQ92904 295 aaKnown RBP14.29□□□□□ -0.12
SS18-215ENST00000580642 AURKBQ96GD4 344 aaPredicted RBP14.29□□□□□ -0.12
SS18-215ENST00000580642 CLPTM1LQ96KA5 538 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 VN1R1Q9GZP7 353 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 CHST8Q9H2A9 424 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 IKZF5Q9H5V7 419 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 GORASP2Q9H8Y8 452 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 POLR1BQ9H9Y6 1135 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 RYDENQ9NUL5 291 aaKnown RBP14.29□□□□□ -0.12
SS18-215ENST00000580642 GPATCH2Q9NW75 528 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 MAT2BQ9NZL9 334 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 CTSFQ9UBX1 484 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 C19orf25Q9UFG5 118 aaPredicted RBP14.29□□□□□ -0.12
SS18-215ENST00000580642 CFL2Q9Y281 166 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 PADI2Q9Y2J8 665 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 SNX13Q9Y5W8 968 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 ZNF292O60281 2723 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 FAM186AA6NE01 2351 aa14.29□□□□□ -0.12
SS18-215ENST00000580642 C9orf172C9J069 976 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 ANKRD65E5RJM6 399 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 TNFRSF21O75509 655 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 CDC123O75794 336 aaPredicted RBP14.28□□□□□ -0.12
SS18-215ENST00000580642 PDE5AO76074 875 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 HEXBP07686 556 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 MAOAP21397 527 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 MC3RP41968 323 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 KHKP50053 298 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 EMP2P54851 167 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 PSPHP78330 225 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 FUT7Q11130 342 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 ELOAQ14241 798 aaKnown RBP14.28□□□□□ -0.12
SS18-215ENST00000580642 SELPLGQ14242 412 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 ERV3-1Q14264 604 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 NCF4Q15080 339 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 NSDHLQ15738 373 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 CYP51A1Q16850 503 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 GCNT6Q5T4J0 391 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 INTS11Q5TA45 600 aaKnown RBP14.28□□□□□ -0.12
SS18-215ENST00000580642 PRAMEF8Q5VWM4 474 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 PRAMEF7Q5VXH5 474 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 FAM180BQ6P0A1 224 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 MICU2Q8IYU8 434 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 CDRT4Q8N9R6 151 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 C11orf65Q8NCR3 313 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 NUP43Q8NFH3 380 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 METTL21AQ8WXB1 218 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 HOXB13Q92826 284 aaPredicted RBP14.28□□□□□ -0.12
SS18-215ENST00000580642 MR1Q95460 341 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 SLC35G5Q96KT7 338 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 SPSB2Q99619 263 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 ACTRT3Q9BYD9 372 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 RBCK1Q9BYM8 510 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 NECTIN3Q9NQS3 549 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 ACSL6Q9UKU0 697 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 MKL2Q9ULH7 1088 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 FAF1Q9UNN5 650 aaPredicted RBP14.28□□□□□ -0.12
SS18-215ENST00000580642 SATB2Q9UPW6 733 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 LIPT1Q9Y234 373 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 PCDHGB3Q9Y5G1 929 aa14.28□□□□□ -0.12
SS18-215ENST00000580642 SPTBP11277 2137 aa14.27□□□□□ -0.12
SS18-215ENST00000580642 SCN3AQ9NY46 2000 aa14.27□□□□□ -0.12
SS18-215ENST00000580642 A0A1W2PNU3 283 aaPredicted RBP14.27□□□□□ -0.13
SS18-215ENST00000580642 TMEM247A6NEH6 219 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 AQP12BA6NM10 295 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 IDSB3KWA1 339 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 C21orf140B9A014 251 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 TGFBR3LH3BV60 316 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 PRAMEF2O60811 474 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 ALOX12BO75342 701 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 JRKO75564 520 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 DXOO77932 396 aaKnown RBP14.27□□□□□ -0.13
SS18-215ENST00000580642 IFNA16P05015 189 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 HMGN2P05204 90 aaKnown RBP14.27□□□□□ -0.13
SS18-215ENST00000580642 MATN1P21941 496 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 CRATP43155 626 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 DSTNP60981 165 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 ID2Q02363 134 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 FLOT2Q14254 428 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 LTB4RQ15722 352 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 VMACQ2NL98 169 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 EXOSC6Q5RKV6 272 aaKnown RBP14.27□□□□□ -0.13
SS18-215ENST00000580642 MFSD4BQ5TF39 518 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 LCN8Q6JVE9 175 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 CDC73Q6P1J9 531 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 TMEM205Q6UW68 189 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 FAM198BQ6UWH4 519 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 ANGPTL8Q6UXH0 198 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 DHFR2Q86XF0 187 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 RNF130Q86XS8 419 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 AQP12AQ8IXF9 295 aa14.27□□□□□ -0.13
SS18-215ENST00000580642 LGI4Q8N135 537 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms