RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 AP1ARQ63HQ0 302 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 FCRL6Q6DN72 434 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 FBXO42Q6P3S6 717 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 ZNF773Q6PK81 442 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 PRSS42Q7Z5A4 293 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 RANBP3LQ86VV4 465 aaPredicted RBP7.08□□□□□ -1.28
VPS39-204ENST00000561818 P3H2Q8IVL5 708 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 CMIPQ8IY22 773 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 GPR135Q8IZ08 494 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 ARL14Q8N4G2 192 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 OR10G2Q8NGC3 310 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 ERLEC1Q96DZ1 483 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 DHRS1Q96LJ7 313 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 PRRC1Q96M27 445 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 ZNF681Q96N22 645 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 HS3ST6Q96QI5 342 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 CCNL2Q96S94 520 aaPredicted RBP7.08□□□□□ -1.28
VPS39-204ENST00000561818 PITX2Q99697 317 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 TREX2Q9BQ50 279 aaPredicted RBP7.08□□□□□ -1.28
VPS39-204ENST00000561818 G6PC3Q9BUM1 346 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 TRIM8Q9BZR9 551 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 OR51I1Q9H343 314 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 PIGUQ9H490 435 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 TOR3AQ9H497 397 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 MTHFD2LQ9H903 347 aaPredicted RBP7.08□□□□□ -1.28
VPS39-204ENST00000561818 PRMT8Q9NR22 394 aaPredicted RBP7.08□□□□□ -1.28
VPS39-204ENST00000561818 FAM118AQ9NWS6 357 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 NDUFAF4Q9P032 175 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 PDP1Q9P0J1 537 aaPredicted RBP7.08□□□□□ -1.28
VPS39-204ENST00000561818 SEMA5BQ9P283 1151 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 PRODH2Q9UF12 536 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 ACAD8Q9UKU7 415 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 C19orf53Q9UNZ5 99 aaPredicted RBP7.08□□□□□ -1.28
VPS39-204ENST00000561818 MN1Q10571 1320 aaPredicted RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 DSPPQ9NZW4 1301 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 DPPA5A6NC42 116 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 ENO4A6NNW6 628 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 PDLIM1O00151 329 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 AP3D1O14617 1153 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 PCDH17O14917 1159 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 YY2O15391 372 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 LAMTOR5O43504 91 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 OR10H2O60403 315 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 PRAMEF2O60811 474 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 CTSVO60911 334 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 STX11O75558 287 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 KLHL18O94889 574 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 HMGN2P05204 90 aaKnown RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 DBIP07108 87 aaKnown RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 H1F0P07305 194 aaKnown RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 FESP07332 822 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 HBQ1P09105 142 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 ANKRD34CP0C6C1 535 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 IL9P15248 144 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 EEF1B2P24534 225 aaKnown RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 ALDH4A1P30038 563 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 CDK9P50750 372 aaKnown RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 DUSP3P51452 185 aaPredicted RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 UGT2B15P54855 530 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 RAB8AP61006 207 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 DCAF7P61962 342 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 OLR1P78380 273 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 HSD11B2P80365 405 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 VLDLRP98155 873 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 ALDH6A1Q02252 535 aaKnown RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 ACY1Q03154 408 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 SIGLEC14Q08ET2 396 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 ST3GAL3Q11203 375 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 MAP4K2Q12851 820 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 DUSP8Q13202 625 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 KCNAB2Q13303 367 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 SLC14A1Q13336 389 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 CCDC85BQ15834 202 aaPredicted RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 ARHGAP11BQ3KRB8 267 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 DEFB134Q4QY38 66 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 GPAT3Q53EU6 434 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 COX20Q5RI15 118 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 DCST1Q5T197 706 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 RNF220Q5VTB9 566 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 HEPHL1Q6MZM0 1159 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 MFSD12Q6NUT3 480 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 RPL13AP3Q6NVV1 102 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 TNFAIP8L2Q6P589 184 aaPredicted RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 CD300LDQ6UXZ3 194 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 RRM2BQ7LG56 351 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 ZNF551Q7Z340 670 aaPredicted RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 GPR141Q7Z602 305 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 MCATQ8IVS2 390 aaKnown RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 SLITRK4Q8IW52 837 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 SLC44A2Q8IWA5 706 aaPredicted RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 ZNF440Q8IYI8 595 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 OFCC1Q8IZS5 231 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 VWA5B2Q8N398 1253 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 DNAJC22Q8N4W6 341 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 HORMAD2Q8N7B1 307 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 CHDHQ8NE62 594 aaPredicted RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 OR7G1Q8NGA0 311 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 OR5AK3PQ8NH89 298 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 CCL4L1Q8NHW4 92 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 C9orf43Q8TAL5 461 aaPredicted RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms