RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 IMPG1Q17R60 797 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 PRICKLE4Q2TBC4 344 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 PRAMEF20Q5VT98 475 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 LIPMQ5VYY2 423 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 MTFR2Q6P444 385 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 NCCRP1Q6ZVX7 275 aaPredicted RBP14.44□□□□□ -0.1
VPS39-203ENST00000561797 MRGPRGQ86SM5 289 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 SLC22A16Q86VW1 577 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 DOLPP1Q86YN1 238 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 C10orf107Q8IVU9 208 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 TAGAPQ8N103 731 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 AENQ8WTP8 325 aaKnown RBP14.44□□□□□ -0.1
VPS39-203ENST00000561797 C16orf78Q8WTQ4 265 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 CNRIP1Q96F85 164 aaPredicted RBP14.44□□□□□ -0.1
VPS39-203ENST00000561797 PHF12Q96QT6 1004 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 IQCGQ9H095 443 aaKnown RBP14.44□□□□□ -0.1
VPS39-203ENST00000561797 TNFRSF12AQ9NP84 129 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 MAT2BQ9NZL9 334 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 MID2Q9UJV3 735 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 UTS2RQ9UKP6 389 aa14.44□□□□□ -0.1
VPS39-203ENST00000561797 ARHGAP21Q5T5U3 1957 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 SERTM1A2A2V5 107 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 SPAG7O75391 227 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 ATP1B1P05026 303 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 ANXA4P09525 319 aaPredicted RBP14.43□□□□□ -0.1
VPS39-203ENST00000561797 NUDT17P0C025 328 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 FBXO45P0C2W1 286 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 S1PR1P21453 382 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 TIA1P31483 386 aaKnown RBP eCLIP14.43□□□□□ -0.1
VPS39-203ENST00000561797 DCTP40126 519 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 KCNJ2P63252 427 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 ADORA2A-AS1P86434 159 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 MGAT2Q10469 447 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 MAP4K2Q12851 820 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 PCLAFQ15004 111 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 LTB4RQ15722 352 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 PAOXQ6QHF9 649 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 TRABD2AQ86V40 505 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 SRRM1Q8IYB3 904 aaKnown RBP14.43□□□□□ -0.1
VPS39-203ENST00000561797 CCDC116Q8IYX3 515 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 PRR22Q8IZ63 422 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 VWA5B2Q8N398 1253 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 RIBC1Q8N443 379 aaPredicted RBP14.43□□□□□ -0.1
VPS39-203ENST00000561797 TMEM251Q8N6I4 163 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 ZNF441Q8N8Z8 693 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 SIMC1Q8NDZ2 872 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 OR7G1Q8NGA0 311 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 OR10G3Q8NGC4 313 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 CDC26Q8NHZ8 85 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 PAQR8Q8TEZ7 354 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 ADIPOR1Q96A54 375 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 TP53INP1Q96A56 240 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 EXOSC8Q96B26 276 aaKnown RBP14.43□□□□□ -0.1
VPS39-203ENST00000561797 APOPT1Q96IL0 206 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 IL1RL2Q9HB29 575 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 DTX4Q9Y2E6 619 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 MEMO1Q9Y316 297 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 PLLPQ9Y342 182 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 FIS1Q9Y3D6 152 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 NPFFR2Q9Y5X5 522 aa14.43□□□□□ -0.1
VPS39-203ENST00000561797 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.43□□□□□ -0.1
VPS39-203ENST00000561797 CACNA1CQ13936 2221 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 ATP6AP2A0A1C7CYW4 349 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 PRSS44E7EML9 344 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 H3BQF6 201 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 ATP6AP2O75787 350 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 GLSO94925 669 aaPredicted RBP14.42□□□□□ -0.1
VPS39-203ENST00000561797 DRD2P14416 443 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 GPX3P22352 226 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 MAGEA5P43359 124 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 FBXW4P57775 412 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 FOXO1Q12778 655 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 NNATQ16517 81 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 ERCC6LQ2NKX8 1250 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 TRMT12Q53H54 448 aaKnown RBP14.42□□□□□ -0.1
VPS39-203ENST00000561797 CLEC6AQ6EIG7 209 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 WDR93Q6P2C0 686 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 EMBQ6PCB8 327 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 RPTNQ6XPR3 784 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 RGS9BPQ6ZS82 235 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 CD163Q86VB7 1156 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 DND1Q8IYX4 353 aaKnown RBP14.42□□□□□ -0.1
VPS39-203ENST00000561797 LRRC25Q8N386 305 aaPredicted RBP14.42□□□□□ -0.1
VPS39-203ENST00000561797 FBXW8Q8N3Y1 598 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 ZNF808Q8N4W9 903 aaPredicted RBP14.42□□□□□ -0.1
VPS39-203ENST00000561797 BANPQ8N9N5 519 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 FAM57AQ8TBR7 257 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 JSRP1Q96MG2 331 aaPredicted RBP14.42□□□□□ -0.1
VPS39-203ENST00000561797 ZNF681Q96N22 645 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 GATA5Q9BWX5 397 aaPredicted RBP14.42□□□□□ -0.1
VPS39-203ENST00000561797 SH2D2AQ9NP31 389 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 SLC17A7Q9P2U7 560 aa14.42□□□□□ -0.1
VPS39-203ENST00000561797 CHCHD2Q9Y6H1 151 aaPredicted RBP14.42□□□□□ -0.1
VPS39-203ENST00000561797 CAPN14A8MX76 684 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 TRIM13O60858 407 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 CELA3AP09093 270 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 UROSP10746 265 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 PCSK2P16519 638 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 ALDH3A1P30838 453 aa14.41□□□□□ -0.1
VPS39-203ENST00000561797 SOX18P35713 384 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms