RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-215ENST00000561436 PRDM4Q9UKN5 801 aa3.29□□□□□ -1.88
HERC1-215ENST00000561436 ELF5Q9UKW6 265 aaPredicted RBP3.29□□□□□ -1.88
HERC1-215ENST00000561436 NCKAP1Q9Y2A7 1128 aa3.29□□□□□ -1.88
HERC1-215ENST00000561436 PRG3Q9Y2Y8 225 aaPredicted RBP3.29□□□□□ -1.88
HERC1-215ENST00000561436 SNX5Q9Y5X3 404 aa3.29□□□□□ -1.88
HERC1-215ENST00000561436 MYH13Q9UKX3 1938 aa3.29□□□□□ -1.88
HERC1-215ENST00000561436 CDK5RAP2Q96SN8 1893 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 TRBV5-5A0A0J9YX44 114 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 A0A1W2PRV1 198 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 BCLAF3A2AJT9 711 aaKnown RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 E5RGE8 158 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 SPECC1L-ADORA2AF8WAN1 911 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 FPGTO14772 594 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 CCL16O15467 120 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 TTI1O43156 1089 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 RTN2O75298 545 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 GLCEO94923 617 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 AP2A2O94973 939 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 GOSR1O95249 250 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 DEXIO95424 95 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 APBB3O95704 486 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 PNPP00491 289 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 ANKRD34CP0C6C1 535 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 KRT3P12035 628 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 F3P13726 295 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 KCNE1P15382 129 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 ARF4P18085 180 aaPredicted RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 AADACP22760 399 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 CCNE1P24864 410 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 PSMA5P28066 241 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 GDI1P31150 447 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 NAMPTP43490 491 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 NKX2-1P43699 371 aaPredicted RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 TUFMP49411 452 aaKnown RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 NOVA1P51513 510 aaKnown RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 LINC01547P58512 204 aaPredicted RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 SNRPD1P62314 119 aaKnown RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 RPP38P78345 283 aaKnown RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 ABRQ12979 859 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 ORC2Q13416 577 aaPredicted RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 RBM39Q14498 530 aaKnown RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 PDGFRLQ15198 375 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 MAPK11Q15759 364 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 ZNF74Q16587 644 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 UPP1Q16831 310 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 GPR33Q49SQ1 333 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 IFI44LQ53G44 452 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 FFAR4Q5NUL3 377 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 VITQ6UXI7 678 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 IL17RELQ6ZVW7 336 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 KLHDC8AQ8IYD2 350 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 BLIDQ8IZY5 108 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 APCDD1Q8J025 514 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 LPCAT1Q8NF37 534 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 OR10G8Q8NGN5 311 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 OR2T11Q8NH01 316 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 OR1L3Q8NH93 324 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 OLIG1Q8TAK6 271 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 TBCKQ8TEA7 893 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 ZNRF4Q8WWF5 429 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 EEF2KMTQ96G04 330 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 SENP5Q96HI0 755 aaPredicted RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 MAGED4Q96JG8 741 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 F2RL3Q96RI0 385 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 NDNQ99608 321 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 ALKBH7Q9BT30 221 aaPredicted RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 FUCA2Q9BTY2 467 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 TIPINQ9BVW5 301 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 SHARPINQ9H0F6 387 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 DPEP2Q9H4A9 486 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 NXF3Q9H4D5 531 aaKnown RBP3.28□□□□□ -1.88
HERC1-215ENST00000561436 TMEM9BQ9NQ34 198 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 CNIH4Q9P003 139 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 FBXW2Q9UKT8 454 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 NSG2Q9Y328 171 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 TANC1Q9C0D5 1861 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 TECTAO75443 2155 aa3.28□□□□□ -1.88
HERC1-215ENST00000561436 COL4A4P53420 1690 aaPredicted RBP3.27□□□□□ -1.89
HERC1-215ENST00000561436 FASNP49327 2511 aaKnown RBP3.27□□□□□ -1.89
HERC1-215ENST00000561436 MYH1P12882 1939 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 A0A087WUV0 522 aaPredicted RBP3.27□□□□□ -1.89
HERC1-215ENST00000561436 A0A087WW49 117 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 KLF18A0A0U1RQI7 1052 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 SMIM28A0A1B0GU29 152 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 HHLA1C9JL84 531 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 CACNB4O00305 520 aaPredicted RBP3.27□□□□□ -1.89
HERC1-215ENST00000561436 SLC1A7O00341 560 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 PGRMC2O15173 223 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 EDIL3O43854 480 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 CSDE1O75534 798 aaKnown RBP3.27□□□□□ -1.89
HERC1-215ENST00000561436 SLITRK3O94933 977 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 GAS8-AS1O95177 125 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 LETM1O95202 739 aaPredicted RBP3.27□□□□□ -1.89
HERC1-215ENST00000561436 GAS8O95995 478 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 PAK4O96013 591 aaPredicted RBP3.27□□□□□ -1.89
HERC1-215ENST00000561436 IGHDP01880 384 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 RAF1P04049 648 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 GPIP06744 558 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 CCDC192P0DO97 292 aa3.27□□□□□ -1.89
HERC1-215ENST00000561436 CPA3P15088 417 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms