RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CTAG2O75638 210 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 CLDN9O95484 217 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 ACSL3O95573 720 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 KLK1P06870 262 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 PIK3R1P27986 724 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 GALNSP34059 522 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 SERPINB8P50452 374 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 CRYZQ08257 329 aaKnown RBP10.66□□□□□ -0.7
USP3-220ENST00000561381 FUT7Q11130 342 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 TBL3Q12788 808 aaKnown RBP10.66□□□□□ -0.7
USP3-220ENST00000561381 RPS6KA2Q15349 733 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 ACSF3Q4G176 576 aaPredicted RBP10.66□□□□□ -0.7
USP3-220ENST00000561381 SGO1Q5FBB7 561 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 FNDC7Q5VTL7 733 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 TMEM198Q66K66 360 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 DESI1Q6ICB0 168 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 KLC3Q6P597 504 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 RPS27LQ71UM5 84 aaKnown RBP10.66□□□□□ -0.7
USP3-220ENST00000561381 ZNF572Q7Z3I7 529 aaPredicted RBP10.66□□□□□ -0.7
USP3-220ENST00000561381 CCDC91Q7Z6B0 441 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 GALNT12Q8IXK2 581 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 PRR22Q8IZ63 422 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 TAGAPQ8N103 731 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 MMP21Q8N119 569 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 LIX1Q8N485 282 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 ZNF615Q8N8J6 731 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 TNIP2Q8NFZ5 429 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 SPPL2AQ8TCT8 520 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 ADIPOR1Q96A54 375 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 TP53INP1Q96A56 240 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 ZNF597Q96LX8 424 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 RILPQ96NA2 401 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 GNRHR2Q96P88 292 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 SERPINI1Q99574 410 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 MRPL1Q9BYD6 325 aaKnown RBP10.66□□□□□ -0.7
USP3-220ENST00000561381 LIME1Q9H400 295 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 QPCTLQ9NXS2 382 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 DNAJB12Q9NXW2 375 aaKnown RBP10.66□□□□□ -0.7
USP3-220ENST00000561381 PSD3Q9NYI0 1048 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 NINJ2Q9NZG7 142 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 B4GALT7Q9UBV7 327 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 DTX4Q9Y2E6 619 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 SLC6A5Q9Y345 797 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 TNPO3Q9Y5L0 923 aaKnown RBP10.66□□□□□ -0.7
USP3-220ENST00000561381 NPFFR2Q9Y5X5 522 aa10.66□□□□□ -0.7
USP3-220ENST00000561381 ANKRD33BA6NCL7 494 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 PPP6CO00743 305 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 TRAPPC6AO75865 159 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 SEMA3DO95025 777 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 CD1EP15812 388 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 S1PR1P21453 382 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 NT5EP21589 574 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 BMP5P22003 454 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 UQCRC1P31930 480 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 XKP51811 444 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 CCNG1P51959 295 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 IST1P53990 364 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 ETF1P62495 437 aaKnown RBP10.65□□□□□ -0.7
USP3-220ENST00000561381 TRAF3Q13114 568 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 NNATQ16517 81 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 HLA-DQA1Q5Y7H0 255 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 FRG2Q64ET8 278 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 FAM111BQ6SJ93 734 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 SIMC1Q8NDZ2 872 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 MYRIPQ8NFW9 859 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 OR4K14Q8NGD5 310 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 ATP6V1E2Q96A05 226 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 FRG2BQ96QU4 278 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 TIMP4Q99727 224 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 GPATCH1Q9BRR8 931 aaKnown RBP10.65□□□□□ -0.7
USP3-220ENST00000561381 LRRC1Q9BTT6 524 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 OR10A5Q9H207 317 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 UBQLN3Q9H347 655 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 ACSS3Q9H6R3 686 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 FARSBQ9NSD9 589 aaKnown RBP10.65□□□□□ -0.7
USP3-220ENST00000561381 CRIM1Q9NZV1 1036 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 PCTPQ9UKL6 214 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 MPDZO75970 2070 aa10.65□□□□□ -0.7
USP3-220ENST00000561381 EXPH5Q8NEV8 1989 aa10.65□□□□□ -0.71
USP3-220ENST00000561381 MTORP42345 2549 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 HSPB2A8KAH6 182 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 AHRRA9YTQ3 701 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 SYT5O00445 386 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 TP53I11O14683 189 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 DIAPH2O60879 1101 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 EPPINO95925 133 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 CPMP14384 443 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 GPX3P22352 226 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 CEACAM8P31997 349 aaPredicted RBP10.64□□□□□ -0.71
USP3-220ENST00000561381 SOX18P35713 384 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 CASP3P42574 277 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 MAGEA12P43365 314 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 KIR2DL3P43628 341 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 CDK9P50750 372 aaKnown RBP10.64□□□□□ -0.71
USP3-220ENST00000561381 DUSP2Q05923 314 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 HSPB2Q16082 182 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 EIPR1Q53HC9 387 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 TBCELQ5QJ74 424 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 DCST1Q5T197 706 aa10.64□□□□□ -0.71
USP3-220ENST00000561381 CCNYL2Q5T2Q4 361 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms