RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 NAXDQ8IW45 347 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 MFSD9Q8NBP5 474 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 OR4C6Q8NH72 309 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 OR1L3Q8NH93 324 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 CREB3L4Q8TEY5 395 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 IPCEF1Q8WWN9 437 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 DNAJC9Q8WXX5 260 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 PMM1Q92871 262 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 LINC00615Q96LM1 132 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SERINC2Q96SA4 455 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SPATA5L1Q9BVQ7 753 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 CCDC106Q9BWC9 280 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 RLIMQ9NVW2 624 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 FAM120CQ9NX05 1096 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 LYARQ9NX58 379 aaKnown RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 PDP1Q9P0J1 537 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 P2RX2Q9UBL9 471 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 EPHA6Q9UF33 1036 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 C19orf25Q9UFG5 118 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-209ENST00000560637 MCM8Q9UJA3 840 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 RPS6KA6Q9UK32 745 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 PILRBQ9UKJ0 227 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 MAPRE3Q9UPY8 281 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 B3GALT1Q9Y5Z6 326 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 SPG11Q96JI7 2443 aa5.13□□□□□ -1.59
VPS13C-209ENST00000560637 TARM1B6A8C7 271 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 H0YIV9 168 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 M0R3H8 397 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 NUDT21O43809 227 aaKnown RBP5.12□□□□□ -1.59
VPS13C-209ENST00000560637 SRPX2O60687 465 aaPredicted RBP5.12□□□□□ -1.59
VPS13C-209ENST00000560637 DNAJB6O75190 326 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 PCSK2P16519 638 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 SFTPDP35247 375 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 DLSTP36957 453 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 NUP107P57740 925 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 CDKL1Q00532 357 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 REEP5Q00765 189 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 MED21Q13503 144 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 UGT8Q16880 541 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 SFT2D3Q587I9 215 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 PWWP2BQ6NUJ5 590 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 TMEM71Q6P5X7 295 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 SPRED1Q7Z699 444 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 LAPTM4BQ86VI4 370 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 SAMD14Q8IZD0 417 aaPredicted RBP5.12□□□□□ -1.59
VPS13C-209ENST00000560637 CDS1Q92903 461 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 TMEM125Q96AQ2 219 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 TMEM19Q96HH6 336 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 ART5Q96L15 291 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 SGPP1Q9BX95 441 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 NEUROD4Q9HD90 331 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 SDR39U1Q9NRG7 319 aaPredicted RBP5.12□□□□□ -1.59
VPS13C-209ENST00000560637 TEKT2Q9UIF3 430 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 POMT2Q9UKY4 750 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 SRPK3Q9UPE1 567 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 PCDHGB3Q9Y5G1 929 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 GPR45Q9Y5Y3 372 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 SIP14410 1827 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 C2orf92A0A1B0GVN3 265 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 PDE9AO76083 593 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 STK17BO94768 372 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 CSTAP01040 98 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 HIST1H2ABP04908 130 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 RETP07949 1114 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 HSD3B1P14060 373 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 ACPPP15309 386 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 DDCP20711 480 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 GPX3P22352 226 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 PPIBP23284 216 aaKnown RBP5.12□□□□□ -1.59
VPS13C-209ENST00000560637 HSD3B2P26439 372 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 CNR2P34972 360 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 MLLT10P55197 1068 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 POU6F2P78424 691 aaPredicted RBP5.12□□□□□ -1.59
VPS13C-209ENST00000560637 RUNX2Q13950 521 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 ZIC1Q15915 447 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 PDCD4Q53EL6 469 aaKnown RBP5.12□□□□□ -1.59
VPS13C-209ENST00000560637 TNFAIP8L3Q5GJ75 292 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 HSDL2Q6YN16 418 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 HIST3H2AQ7L7L0 130 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 GPAT4Q86UL3 456 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 ZBTB46Q86UZ6 589 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 METTL4Q8N3J2 472 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 KIAA1958Q8N8K9 716 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 L3MBTL4Q8NA19 623 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 OR6C4Q8NGE1 309 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 SUN3Q8TAQ9 357 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 HIST1H2ACQ93077 130 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 HSH2DQ96JZ2 352 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 ANKRD27Q96NW4 1050 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 LRMDAQ9H2I8 198 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 TMEM27Q9HBJ8 222 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 CHCHD3Q9NX63 227 aaKnown RBP5.12□□□□□ -1.59
VPS13C-209ENST00000560637 MAGEL2Q9UJ55 1249 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 PADI2Q9Y2J8 665 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 PRRC2CQ9Y520 2896 aaKnown RBP5.12□□□□□ -1.59
VPS13C-209ENST00000560637 VPS13AQ96RL7 3174 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 ZNF318Q5VUA4 2279 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 MIA3Q5JRA6 1907 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 AGAP14A8MT82 685 aa5.12□□□□□ -1.59
VPS13C-209ENST00000560637 MCIDASD6RGH6 385 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms