RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 DEFB109BQ30KR1 87 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 MMEL1Q495T6 779 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 SPDYE7PQ495Y7 208 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 SOWAHCQ53LP3 525 aaPredicted RBP8.61□□□□□ -1.03
LDLR-210ENST00000559340 ZNF385BQ569K4 471 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 FAM69BQ5VUD6 431 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 ZCCHC12Q6PEW1 402 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 C19orf48Q6RUI8 117 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 HSDL2Q6YN16 418 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 SLC29A4Q7RTT9 530 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 APLFQ8IW19 511 aaPredicted RBP8.61□□□□□ -1.03
LDLR-210ENST00000559340 VWA5B2Q8N398 1253 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 PCYOX1LQ8NBM8 494 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 OR56A1Q8NGH5 318 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 OR4A15Q8NGL6 344 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 OR9A2Q8NGT5 310 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 OR8K3Q8NH51 312 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 RP9Q8TA86 221 aaKnown RBP8.61□□□□□ -1.03
LDLR-210ENST00000559340 SLC2A12Q8TD20 617 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 SFXN5Q8TD22 340 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 PTPMT1Q8WUK0 201 aaPredicted RBP8.61□□□□□ -1.03
LDLR-210ENST00000559340 APOBEC4Q8WW27 367 aaKnown RBP8.61□□□□□ -1.03
LDLR-210ENST00000559340 CIDECQ96AQ7 238 aaPredicted RBP8.61□□□□□ -1.03
LDLR-210ENST00000559340 CTHRC1Q96CG8 243 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 CMTM5Q96DZ9 223 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 ELP4Q96EB1 424 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 CCDC115Q96NT0 180 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 PANX1Q96RD7 426 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 WDR77Q9BQA1 342 aaPredicted RBP8.61□□□□□ -1.03
LDLR-210ENST00000559340 DEFB126Q9BYW3 111 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 ZNF385DQ9H6B1 395 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 ZNF160Q9HCG1 818 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 TAS2R9Q9NYW1 312 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 MAT2BQ9NZL9 334 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 BCAP29Q9UHQ4 241 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 LEF1Q9UJU2 399 aaPredicted RBP8.61□□□□□ -1.03
LDLR-210ENST00000559340 VPS4AQ9UN37 437 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 ERVK-19Q9WJR5 959 aa8.61□□□□□ -1.03
LDLR-210ENST00000559340 IGHV3-20A0A0C4DH32 117 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ARGFXA6NJG6 315 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 EIF4E1BA6NMX2 242 aaKnown RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 RFXANKO14593 260 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ERN1O75460 977 aaKnown RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 KRT75O95678 551 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 C6orf47O95873 294 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 NPPAP01160 153 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ITGB2P05107 769 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 UQCRC2P22695 453 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 PPIBP23284 216 aaKnown RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 ITGA3P26006 1051 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ITPKBP27987 946 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 IL12AP29459 219 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 PRDX6P30041 224 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 MAGEA8P43361 318 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 CCT3P49368 545 aaKnown RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 PRIM2P49643 509 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 MNAT1P51948 309 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 DGKQP52824 942 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 WNT3P56703 355 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 FOXL2P58012 376 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 CXADRP78310 365 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 SRSF6Q13247 344 aaKnown RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 CYLC2Q14093 348 aaPredicted RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 RCAN2Q14206 197 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ZNHIT3Q15649 155 aaPredicted RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 ZNF750Q32MQ0 723 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ZNF628Q5EBL2 1059 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 COQ5Q5HYK3 327 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 BORAQ6PGQ7 559 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 FAM111BQ6SJ93 734 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 TMEM64Q6YI46 380 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ZNF551Q7Z340 670 aaPredicted RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 FUNDC1Q8IVP5 155 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 SHISA5Q8N114 240 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 LGI4Q8N135 537 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 SLC5A8Q8N695 610 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 NFAM1Q8NET5 270 aaPredicted RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 ADCY4Q8NFM4 1077 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 OR9I1Q8NGQ6 314 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 GOT1L1Q8NHS2 421 aaPredicted RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 PSMA8Q8TAA3 256 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 SUN3Q8TAQ9 357 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ZNF721Q8TF20 911 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 SNRNP27Q8WVK2 155 aaKnown RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 KAT2AQ92830 837 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 NCLNQ969V3 563 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 TEX37Q96LM6 180 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ZNF354BQ96LW1 612 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 SEMA4CQ9C0C4 833 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 NMUR2Q9GZQ4 415 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 LHPPQ9H008 270 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ING2Q9H160 280 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 OR10A5Q9H207 317 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 RAD21L1Q9H4I0 556 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 DDX18Q9NVP1 670 aaKnown RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 GID8Q9NWU2 228 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ABI3Q9P2A4 366 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 ZNF639Q9UID6 485 aa8.6□□□□□ -1.03
LDLR-210ENST00000559340 C19orf53Q9UNZ5 99 aaPredicted RBP8.6□□□□□ -1.03
LDLR-210ENST00000559340 SNX8Q9Y5X2 465 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms