RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ADRA1AP35348 466 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ALDH3B1P43353 468 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ZFP36L2P47974 494 aaKnown RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 POU3F4P49335 361 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 CSRP3P50461 194 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ATP4BP51164 291 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 NDST1P52848 882 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ARFIP1P53367 373 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 NDUFV3P56181 108 aaKnown RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 KRTAP10-8P60410 259 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 HSF2Q03933 536 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 CD300CQ08708 224 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 CALCOCO2Q13137 446 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 NME3Q13232 169 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 SCGB2A2Q13296 93 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ENPP2Q13822 863 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 EXOSC2Q13868 293 aaKnown RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 NECTIN1Q15223 517 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 TRIP10Q15642 601 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 UPP1Q16831 310 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ZSWIM7Q19AV6 140 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 MAJINQ3KP22 176 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 TMEM52BQ4KMG9 183 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 RIPPLY2Q5TAB7 128 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 SEL1L2Q5TEA6 688 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 RALGAPA1Q6GYQ0 2036 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ASPHD2Q6ICH7 369 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 SLC39A4Q6P5W5 647 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 AFTPHQ6ULP2 937 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 REG3GQ6UW15 175 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 LCLAT1Q6UWP7 414 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ARSKQ6UWY0 536 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 WASH2PQ6VEQ5 465 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ZNF841Q6ZN19 808 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 DPY19L2P2Q6ZN68 376 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 GDPGP1Q6ZNW5 385 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ASRGL1Q7L266 308 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 GPR142Q7Z601 462 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 GPBP1Q86WP2 473 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 CARM1Q86X55 608 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 TBC1D10CQ8IV04 446 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 CCDC71Q8IV32 467 aaPredicted RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 UNC5CLQ8IV45 518 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 MISPQ8IVT2 679 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ARL6IP6Q8N6S5 226 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ZNF491Q8N8L2 437 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 Q8NBF4 154 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 COLGALT1Q8NBJ5 622 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 SUMF1Q8NBK3 374 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ZNF248Q8NDW4 579 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 FAM71CQ8NEG0 241 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 OR10G7Q8NGN6 311 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 OR1K1Q8NGR3 316 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 OR6F1Q8NGZ6 308 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 WDR36Q8NI36 951 aaKnown RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 GOLGA5Q8TBA6 731 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ZDHHC19Q8WVZ1 309 aaPredicted RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 C11orf52Q96A22 123 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 SLC25A36Q96CQ1 311 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 TRIM44Q96DX7 344 aaPredicted RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 FBXO17Q96EF6 278 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 CCDC51Q96ER9 411 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 C4orf36Q96KX1 117 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 CAPNS2Q96L46 248 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 NSMCE3Q96MG7 304 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 PRICKLE1Q96MT3 831 aaPredicted RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 ALKBH3Q96Q83 286 aaPredicted RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 USP28Q96RU2 1077 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 TESK2Q96S53 571 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 SYT15Q9BQS2 421 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ERP44Q9BS26 406 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 NDUFAF3Q9BU61 184 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 CCDC28BQ9BUN5 200 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ZNF416Q9BWM5 594 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 NMNAT2Q9BZQ4 307 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 NACA2Q9H009 215 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 RAB33BQ9H082 229 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ALG9Q9H6U8 611 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 MTHFD2LQ9H903 347 aaPredicted RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 MED20Q9H944 212 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 IL1RL2Q9HB29 575 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 NMUR1Q9HB89 426 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 VAT1LQ9HCJ6 419 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 NRN1Q9NPD7 142 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 HOMER3Q9NSC5 361 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 CENPMQ9NSP4 180 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 STARD5Q9NSY2 213 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 DEPPQ9NTK1 212 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 VPS54Q9P1Q0 977 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 THEGQ9P2T0 379 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 ATXN10Q9UBB4 475 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 P2RX2Q9UBL9 471 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 EIF3KQ9UBQ5 218 aaKnown RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 ASIC3Q9UHC3 531 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 LAMP5Q9UJQ1 280 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 FZR1Q9UM11 496 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 NIP7Q9Y221 180 aaKnown RBP eCLIP1.36□□□□□ -2.19
USP3-209ENST00000558925 EXOGQ9Y2C4 368 aaKnown RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 FBXO7Q9Y3I1 522 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 MFHAS1Q9Y4C4 1052 aa1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 198.4 ms