RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 YIPF7Q8N8F6 280 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 ATP6V1C2Q8NEY4 427 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 OR4K5Q8NGD3 323 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 BBS10Q8TAM1 723 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 RNF31Q96EP0 1072 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 ZNF514Q96K75 400 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-231ENST00000557433 SLC38A2Q96QD8 506 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 ARHGAP9Q9BRR9 750 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 MARVELD1Q9BSK0 173 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 PITHD1Q9GZP4 211 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-231ENST00000557433 DPEP2Q9H4A9 486 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 GIMAP4Q9NUV9 329 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 MRPL39Q9NYK5 338 aaKnown RBP15.4■□□□□ 0.06
SHMT2-231ENST00000557433 NDRG2Q9UN36 371 aaKnown RBP15.4■□□□□ 0.06
SHMT2-231ENST00000557433 SH2B3Q9UQQ2 575 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 POLHQ9Y253 713 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 DOCK6Q96HP0 2047 aa15.4■□□□□ 0.06
SHMT2-231ENST00000557433 SLC28A2O43868 658 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 SLC19A2O60779 497 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 DGKEP52429 567 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 RPS25P62851 125 aaKnown RBP15.39■□□□□ 0.05
SHMT2-231ENST00000557433 SNAPC1Q16533 368 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 TCTN1Q2MV58 587 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 ZNF805Q5CZA5 627 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 PRAMEF14Q5SWL7 426 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 IER5LQ5T953 404 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 PRAMEF13Q5VWM6 474 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 KHDRBS2Q5VWX1 349 aaKnown RBP15.39■□□□□ 0.05
SHMT2-231ENST00000557433 FAM129CQ86XR2 697 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 OR52P1PQ8NH57 321 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 TM4SF18Q96CE8 201 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 RNFT2Q96EX2 444 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 LINC00615Q96LM1 132 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-231ENST00000557433 PRRC1Q96M27 445 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 CAMK1GQ96NX5 476 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 PELI2Q9HAT8 420 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 BCL2L10Q9HD36 194 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.39■□□□□ 0.05
SHMT2-231ENST00000557433 ADAM29Q9UKF5 820 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 KIF26AQ9ULI4 1882 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-231ENST00000557433 CASKO14936 926 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 LYRM1O43325 122 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 LEFTY1O75610 366 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 HLA-DPB1P04440 258 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 ELFN1P0C7U0 828 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 FAM157BP0CG42 384 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 MMP11P24347 488 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 MMP12P39900 470 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 NNMTP40261 264 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 EVX1P49640 407 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 TSTA3Q13630 321 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-231ENST00000557433 Q5BKY6 102 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 CNIH2Q6PI25 160 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 WDR53Q7Z5U6 358 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-231ENST00000557433 ZER1Q7Z7L7 766 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 PDZD3Q86UT5 571 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 SLC39A11Q8N1S5 342 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 TEX47Q8TBZ9 253 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 ACOT12Q8WYK0 555 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 RFKQ969G6 155 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 ZNF558Q96NG5 402 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 TREX2Q9BQ50 279 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-231ENST00000557433 TMEM43Q9BTV4 400 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 SIRT3Q9NTG7 399 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-231ENST00000557433 ASB6Q9NWX5 421 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 FBXW2Q9UKT8 454 aa15.39■□□□□ 0.05
SHMT2-231ENST00000557433 FAM240BA0A1B0GVZ2 78 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 KDM4EB2RXH2 506 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-231ENST00000557433 CASC3O15234 703 aaKnown RBP15.38■□□□□ 0.05
SHMT2-231ENST00000557433 NDUFB5O43674 189 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 ALDH1A1P00352 501 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 CSF2P04141 144 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 CCNYL3P0C7X3 344 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 PBLDP30039 288 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-231ENST00000557433 OPRD1P41143 372 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 MTNR1AP48039 350 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 VASPP50552 380 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-231ENST00000557433 BTG1P62324 171 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 TRA2BP62995 288 aaKnown RBP15.38■□□□□ 0.05
SHMT2-231ENST00000557433 MAB21L1Q13394 359 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 ANGPT1Q15389 498 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 CCDC58Q4VC31 144 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 PRAMEF8Q5VWM4 474 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 PRAMEF7Q5VXH5 474 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 BICRALQ6AI39 1079 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 SLC27A4Q6P1M0 643 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 LIPIQ6XZB0 460 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 TMC8Q8IU68 726 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 TRIM48Q8IWZ4 208 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 CFAP206Q8IYR0 622 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 IQCF1Q8N6M8 205 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 MORN4Q8NDC4 146 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 OR4D11Q8NGI4 311 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 GNPDA2Q8TDQ7 276 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 TMEM203Q969S6 136 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 KCNJ15Q99712 375 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 TEX12Q9BXU0 123 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 SPNS1Q9H2V7 528 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 NT5DC2Q9H857 520 aa15.38■□□□□ 0.05
SHMT2-231ENST00000557433 SLAMF7Q9NQ25 335 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms