RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RASGRP1O95267 797 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 ICAM2P13598 275 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 CTSEP14091 401 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 AZGP1P25311 298 aaKnown RBP7.27□□□□□ -1.25
LIMA1-216ENST00000552909 C21orf33P30042 268 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-216ENST00000552909 DAPP51397 102 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 DSTNP60981 165 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 B2MP61769 119 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 OLR1P78380 273 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 CACNG1Q06432 222 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 MFSD13AQ14CX5 517 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 QPRTQ15274 297 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 CHRNA6Q15825 494 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 TIMM50Q3ZCQ8 353 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 KDM4DQ6B0I6 523 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 TMEM207Q6UWW9 146 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 DHRS13Q6UX07 377 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 ADAMTSL4Q6UY14 1074 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 TMPRSS11AQ6ZMR5 421 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF765Q7L2R6 523 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 NLRP8Q86W28 1048 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 FNDC5Q8NAU1 212 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 OR10A6Q8NH74 314 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 BTN2A2Q8WVV5 523 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 COX14Q96I36 57 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 THUMPD3Q9BV44 507 aaKnown RBP7.27□□□□□ -1.25
LIMA1-216ENST00000552909 SCNM1Q9BWG6 230 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 HDHD5Q9BXW7 423 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 ASB8Q9H765 288 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 ZC4H2Q9NQZ6 224 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 PHPT1Q9NRX4 125 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-216ENST00000552909 DCAF13Q9NV06 445 aaKnown RBP7.27□□□□□ -1.25
LIMA1-216ENST00000552909 KCTD5Q9NXV2 234 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 NLGN3Q9NZ94 848 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 SPASTQ9UBP0 616 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 SLC23A1Q9UHI7 598 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 PRKAB1Q9Y478 270 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 V9GYH0 126 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 MYLKQ15746 1914 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 PLXNB3Q9ULL4 1909 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 LOC400499M0QZD8 3231 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 A0A0B4J293 547 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 GLYATL1P3A0A0U1RQE8 302 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 EFCAB10A6NFE3 127 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 IFRD1O00458 451 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 TNFRSF10CO14798 259 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 OR1I1O60431 355 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 MTX2O75431 263 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 PDE9AO76083 593 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 PRAMEF1O95521 474 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 TNFP01375 233 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 CD1DP15813 335 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 TNNI3P19429 210 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 OGNP20774 298 aaKnown RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 CPN2P22792 545 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 AK4P27144 223 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 RGS6P49758 472 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 BLKP51451 505 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 CYP4F3Q08477 520 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 GTF2H3Q13889 308 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF267Q14586 743 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 LAPTM4AQ15012 233 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 ATP13A5Q4VNC0 1218 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 XKR7Q5GH72 579 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 ZMAT1Q5H9K5 638 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF549Q6P9A3 640 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 TMEM65Q6PI78 240 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 NRROSQ86YC3 692 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SLC35F3Q8IY50 421 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 OR8H1Q8NGG4 311 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 APH1BQ8WW43 257 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 POP5Q969H6 163 aaKnown RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 COQ8BQ96D53 544 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 REPS1Q96D71 796 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 RNF31Q96EP0 1072 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 MAGEB10Q96LZ2 347 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 TBCDQ9BTW9 1192 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SEMA4BQ9NPR2 832 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 VNN3Q9NY84 501 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 KIF17Q9P2E2 1029 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 PSORS1C1Q9UIG5 152 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 KLK13Q9UKR3 277 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SLC17A4Q9Y2C5 497 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 KLK4Q9Y5K2 254 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 AUP1Q9Y679 476 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 CSNK1G3Q9Y6M4 447 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 NBEAQ8NFP9 2946 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 USP24Q9UPU5 2620 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 PCP4L1A6NKN8 68 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 BTN3A3O00478 584 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 GAPDHSO14556 408 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SLC22A5O76082 557 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 WDR47O94967 919 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 WISP3O95389 354 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SERPINA1P01009 418 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 CDK1P06493 297 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 KELP23276 732 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 TEAD1P28347 426 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 SPAM1P38567 509 aa7.26□□□□□ -1.25
LIMA1-216ENST00000552909 TTPAP49638 278 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms