RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PPIBP23284 216 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CHMP24386 653 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 HSD3B2P26439 372 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GSTM2P28161 218 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CD6P30203 668 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 MAN2A2P49641 1150 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CAV3P56539 151 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 MAT1AQ00266 395 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GINS1Q14691 196 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 MICAQ29983 383 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TRMT12Q53H54 448 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF311Q5JNZ3 666 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CDC73Q6P1J9 531 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 LHFPL3Q86UP9 236 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TSPYL5Q86VY4 417 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GALNT12Q8IXK2 581 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TP53I13Q8NBR0 393 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 NUP43Q8NFH3 380 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 B3GNT7Q8NFL0 401 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 OR2L3Q8NG85 312 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 OR13H1Q8NG92 308 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PHOSPHO2Q8TCD6 241 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SLC7A13Q8TCU3 470 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GRHL3Q8TE85 626 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SETD7Q8WTS6 366 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GEMIN6Q8WXD5 167 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 OR5P2Q8WZ92 322 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 LGALS12Q96DT0 336 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 OR2M4Q96R27 311 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PIP5K1AQ99755 562 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 BTBD1Q9H0C5 482 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 DCSTAMPQ9H295 470 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 MAGIXQ9H6Y5 334 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GIMAP4Q9NUV9 329 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 FBXO34Q9NWN3 711 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TRNAU1APQ9NX07 287 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ETAA1Q9NY74 926 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF624Q9P2J8 865 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ANKMY1Q9P2S6 941 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CD207Q9UJ71 328 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CA14Q9ULX7 337 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 YARS2Q9Y2Z4 477 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 RBMX2Q9Y388 322 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 HCN4Q9Y3Q4 1203 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF780BQ9Y6R6 833 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ENPP4Q9Y6X5 453 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ZC3H12DA2A288 527 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GRXCR2A6NFK2 248 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CNOT3O75175 753 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 JRKO75564 520 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CHRM4P08173 479 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ARAFP10398 606 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CPMP14384 443 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 NDUFV2P19404 249 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CSNK2A2P19784 350 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 HIST1H1TP22492 207 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CMPK1P30085 196 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PEBP1P30086 187 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 IDUAP35475 653 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PGDP52209 483 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 EMP3P54852 163 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 RGS8P57771 180 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CDC42P60953 191 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 RPS7P62081 194 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SHC2P98077 582 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CSTF1Q05048 431 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 DPTQ07507 201 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 VEZF1Q14119 521 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 MYBPC3Q14896 1274 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TAB1Q15750 504 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF630Q2M218 657 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SMU1Q2TAY7 513 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 KLHL12Q53G59 568 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PRAMEF17Q5VTA0 474 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 OTPQ5XKR4 325 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 TCTN3Q6NUS6 607 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 PODNL1Q6PEZ8 512 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 UNC5DQ6UXZ4 953 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 HSDL2Q6YN16 418 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 NLGN4YQ8NFZ3 816 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 OR4K5Q8NGD3 323 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 BBS10Q8TAM1 723 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 APH1BQ8WW43 257 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 FAM46AQ96IP4 442 aaKnown RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 MAGEB10Q96LZ2 347 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 AMDHD1Q96NU7 426 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 GAS2L1Q99501 681 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CENPOQ9BU64 300 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 FAIM2Q9BWQ8 316 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF717Q9BY31 904 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 RSPH9Q9H1X1 276 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ABCB9Q9NP78 766 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ACOT13Q9NPJ3 140 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SNTG1Q9NSN8 517 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF226Q9NYT6 803 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 KCMF1Q9P0J7 381 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 HCN3Q9P1Z3 774 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 SLC9A8Q9Y2E8 581 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 AP3M1Q9Y2T2 418 aa5.28□□□□□ -1.56
LIMA1-215ENST00000552823 CLCA3PQ9Y6N3 262 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms