RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 D2HGDHQ8N465 521 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 FAM86B1Q8N7N1 296 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 CDRT4Q8N9R6 151 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 OR9A4Q8NGU2 314 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 SAP25Q8TEE9 199 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 KLHL6Q8WZ60 621 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 TMEM19Q96HH6 336 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 LOXL4Q96JB6 756 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 MAGED4Q96JG8 741 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 SLC41A2Q96JW4 573 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 C7orf34Q96L11 122 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 NDC1Q9BTX1 674 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 ARMC7Q9H6L4 198 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 MTHFD2LQ9H903 347 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-215ENST00000547672 SYNPO2LQ9H987 977 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 SEC14L3Q9UDX4 400 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 SLC9A8Q9Y2E8 581 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 IFT52Q9Y366 437 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 A0A0C4DFX4 3053 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 TMEM131Q92545 1883 aa12.63□□□□□ -0.39
PTCH1-215ENST00000547672 C7orf72A4D263 438 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 A8MVJ9 347 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 PDLIM1O00151 329 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 UPK1AO00322 258 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 PRAMEF10O60809 474 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 UGT2B11O75310 529 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 PDGFBP01127 241 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-215ENST00000547672 MT-ND1P03886 318 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 ALPLP05186 524 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 LYNP07948 512 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 ALOX5P09917 674 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 NT5EP21589 574 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 GABRA4P48169 554 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 SHC2P98077 582 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 MAP4K2Q12851 820 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 IL18R1Q13478 541 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 LASP1Q14847 261 aaKnown RBP12.62□□□□□ -0.39
PTCH1-215ENST00000547672 SHBQ15464 509 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 ZNHIT3Q15649 155 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-215ENST00000547672 NKG7Q16617 165 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 AMZ1Q400G9 498 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 GPAT3Q53EU6 434 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 C6orf52Q5T4I8 152 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 FAM180BQ6P0A1 224 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 SLC23A3Q6PIS1 610 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 EPHX4Q8IUS5 362 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 ARHGEF39Q8N4T4 335 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 LINC00471Q8N535 108 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 Q8N9G6 341 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-215ENST00000547672 OR9A2Q8NGT5 310 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 UCN3Q969E3 161 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 TAMM41Q96BW9 452 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 MMABQ96EY8 250 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-215ENST00000547672 ZNF354BQ96LW1 612 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 CNBD2Q96M20 576 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 OR1F2PQ96R84 312 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 OR7D2Q96RA2 312 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 STACQ99469 402 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 TREX2Q9BQ50 279 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-215ENST00000547672 ADI1Q9BV57 179 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 GABARAPL1Q9H0R8 117 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 GAREM1Q9H706 876 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 POLE3Q9NRF9 147 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 PNPLA3Q9NST1 481 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 TMEM74BQ9NUR3 256 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 KLHL28Q9NXS3 571 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 GMEB2Q9UKD1 530 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 SRPK3Q9UPE1 567 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 SAMHD1Q9Y3Z3 626 aaKnown RBP12.62□□□□□ -0.39
PTCH1-215ENST00000547672 MMACHCQ9Y4U1 282 aa12.62□□□□□ -0.39
PTCH1-215ENST00000547672 GPC6Q9Y625 555 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-215ENST00000547672 GON4LQ3T8J9 2241 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 A0A0A6YYC8 382 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-215ENST00000547672 I3L1I5 382 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-215ENST00000547672 ZNF749O43361 778 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 KIF1CO43896 1103 aaKnown RBP12.61□□□□□ -0.39
PTCH1-215ENST00000547672 PCDHGA12O60330 932 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 RDH16O75452 317 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 PRKRAO75569 313 aaKnown RBP12.61□□□□□ -0.39
PTCH1-215ENST00000547672 GCM2O75603 506 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-215ENST00000547672 DNAJB5O75953 348 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 MFN2O95140 757 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 CPNE6O95741 557 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 GUSBP08236 651 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 ANKRD34CP0C6C1 535 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 GIMD1P0DJR0 217 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 ANXA8P13928 327 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 NELFEP18615 380 aaKnown RBP12.61□□□□□ -0.39
PTCH1-215ENST00000547672 MYF6P23409 242 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 RRM2P31350 389 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 MC3RP41968 323 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 KCNJ5P48544 419 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 CASP9P55211 416 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 GFERP55789 205 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 BNC1Q01954 994 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 SLC13A2Q13183 592 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 GPR19Q15760 415 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 ZSWIM7Q19AV6 140 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 SLC36A3Q495N2 470 aa12.61□□□□□ -0.39
PTCH1-215ENST00000547672 NKAIN2Q5VXU1 208 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms