RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 MRPL1Q9BYD6 325 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 SLC6A16Q9GZN6 736 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 ANKHQ9HCJ1 492 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 DNAJB12Q9NXW2 375 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 NOP53Q9NZM5 478 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 GIMAP2Q9UG22 337 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 MKL2Q9ULH7 1088 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 ARL2BPQ9Y2Y0 163 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 TMED5Q9Y3A6 229 aa11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 POLR3HQ9Y535 204 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-208ENST00000538933 HYKKA2RU49 373 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 ZNF195O14628 629 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 UBDO15205 165 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 PCDH7O60245 1069 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 ETHE1O95571 254 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 ALOX12P18054 663 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 PRPH2P23942 346 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 HNRNPH1P31943 449 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 CD96P40200 585 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 AVPR1BP47901 424 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 EMP2P54851 167 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 ERVK-8P63133 956 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 BTN3A2P78410 334 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 TUBA3CQ13748 450 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 HERC3Q15034 1050 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 SMU1Q2TAY7 513 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 C6orf136Q5SQH8 315 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 CCNYL2Q5T2Q4 361 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 GARNL3Q5VVW2 1013 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 OR4C11Q6IEV9 310 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 NIPAL1Q6NVV3 410 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 TUBA3EQ6PEY2 450 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 TMEM205Q6UW68 189 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 SPATA19Q7Z5L4 167 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 PIGWQ7Z7B1 504 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 FAM9CQ8IZT9 166 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 GHDCQ8N2G8 530 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 METTL4Q8N3J2 472 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 STON2Q8WXE9 905 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 MS4A6EQ96DS6 147 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 TM4SF19Q96DZ7 209 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 APIPQ96GX9 242 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 METTL2AQ96IZ6 378 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 MAELQ96JY0 434 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 TBCDQ9BTW9 1192 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 EBPLQ9BY08 206 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 KLHL31Q9H511 634 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 KCNK13Q9HB14 408 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 HEY2Q9UBP5 337 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 RNF6Q9Y252 685 aa11.63□□□□□ -0.55
CLSTN3-208ENST00000538933 ZNF407Q9C0G0 2248 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 RTCAO00442 366 aaKnown RBP11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 PLPP1O14494 284 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 PRRG2O14669 202 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 B3GALT2O43825 422 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 CCDC22O60826 627 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 KLK1P06870 262 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 PRPS2P11908 318 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 ICAM2P13598 275 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 IL1RNP18510 177 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 CHRNB4P30926 498 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 TIA1P31483 386 aaKnown RBP eCLIP11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 MAPK12P53778 367 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 MTTPP55157 894 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 EMX2Q04743 252 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 PRTGQ2VWP7 1150 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 DEFB134Q4QY38 66 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 IL23RQ5VWK5 629 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 TMEM214Q6NUQ4 689 aaKnown RBP11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 PRMT9Q6P2P2 845 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 LARP4Q71RC2 724 aaKnown RBP eCLIP11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 COMMD6Q7Z4G1 85 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 BEST3Q8N1M1 668 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 WFDC11Q8NEX6 87 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 UTP15Q8TED0 518 aaKnown RBP11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 ASB5Q8WWX0 329 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 MBD6Q96DN6 1003 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 C18orf12Q96KH6 178 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 MARK4Q96L34 752 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 NPAS2Q99743 824 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 SYNPO2LQ9H987 977 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 KCNJ16Q9NPI9 418 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 KLHL1Q9NR64 748 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 MRGBPQ9NV56 204 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 SPACA6W5XKT8 324 aa11.62□□□□□ -0.55
CLSTN3-208ENST00000538933 NPIPB8E9PQR5 432 aa11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 GUCY1B2O75343 617 aa11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 DCTN3O75935 186 aa11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 GBAP04062 536 aa11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 ANXA4P09525 319 aaPredicted RBP11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 IDO1P14902 403 aa11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 HIST1H1TP22492 207 aaPredicted RBP11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 MEOX1P50221 254 aa11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 ST13P50502 369 aaKnown RBP11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 ARFIP1P53367 373 aa11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 DLX5P56178 289 aa11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 ZNF763Q0D2J5 394 aa11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 TBL3Q12788 808 aaKnown RBP11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 HYAL2Q12891 473 aa11.61□□□□□ -0.55
CLSTN3-208ENST00000538933 MYBPHQ13203 477 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms