RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, human

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-223	ENST00000534442	PSMC5	P62195	406 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	POLR2L	P62875	67 aa	Known RBP	4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TRAF2	Q12933	501 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	PRKAA1	Q13131	559 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TNK1	Q13470	666 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	IHH	Q14623	411 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	E2F5	Q15329	346 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CCDC142	Q17RM4	750 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	DCAF4L1	Q3SXM0	396 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	FILIP1L	Q4L180	1135 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	XKR4	Q5GH76	650 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	C6orf52	Q5T4I8	152 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	GRTP1	Q5TC63	336 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TRNP1	Q6NT89	227 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	FAM122C	Q6P4D5	195 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ZNF549	Q6P9A3	640 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ALKAL1	Q6UXT8	129 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	GCNT7	Q6ZNI0	430 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442		Q6ZSR6	202 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TMPRSS11F	Q6ZWK6	438 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	DET1	Q7L5Y6	550 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ABI3BP	Q7Z7G0	1075 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CCDC83	Q8IWF9	413 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	GBGT1	Q8N5D6	347 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ZNF713	Q8N859	430 aa	Predicted RBP	4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	OR6C4	Q8NGE1	309 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	OR5M8	Q8NGP6	311 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	OCC1	Q8TAD7	63 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	GDAP1	Q8TB36	358 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	PPP4R1	Q8TF05	950 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CT55	Q8WUE5	264 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CRYGN	Q8WXF5	182 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ATL1	Q8WXF7	558 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	FRAT1	Q92837	279 aa	Predicted RBP	4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SEMA4D	Q92854	862 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	PHF21A	Q96BD5	680 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	STAMBPL1	Q96FJ0	436 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	FCRL4	Q96PJ5	515 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	INTS14	Q96SY0	518 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	FEV	Q99581	238 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ZPBP	Q9BS86	351 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	LRRC61	Q9BV99	259 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ULBP3	Q9BZM4	244 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	KRT23	Q9C075	422 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CSTL1	Q9H114	145 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	KCNJ16	Q9NPI9	418 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SEC14L3	Q9UDX4	400 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	APOBEC3B	Q9UH17	382 aa	Known RBP	4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	RNF150	Q9ULK6	438 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	NME7	Q9Y5B8	376 aa		4.08	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SPTY2D1-AS1	A0A0U1RR47	76 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ZCWPW2	A0A1B0GU75	182 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TMEM89	A2RUT3	159 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	HIP1	O00291	1037 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	GPR137B	O60478	399 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	WDR1	O75083	606 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	BMP10	O95393	424 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CLDN9	O95484	217 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	GOT1	P17174	413 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	GM2A	P17900	193 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ADRA2C	P18825	462 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ATP5D	P30049	168 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	MYL7	Q01449	175 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	REL	Q04864	619 aa	Predicted RBP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	DLG1	Q12959	904 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	PLA2G7	Q13093	441 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TRA2A	Q13595	282 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CAPRIN1	Q14444	709 aa	Known RBP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TMEM35A	Q53FP2	167 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TMEM215	Q68D42	235 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	PRR27	Q6MZM9	219 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	C11orf88	Q6PI97	169 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ZNF704	Q6ZNC4	412 aa	Predicted RBP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	IL17REL	Q6ZVW7	336 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	PIWIL3	Q7Z3Z3	882 aa	Known RBP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TMPRSS11B	Q86T26	416 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TRIM69	Q86WT6	500 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SIX6OS1	Q8N1H7	587 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CTCFL	Q8NI51	663 aa	Predicted RBP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	KLK6	Q92876	244 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	ZBED6CL	Q96FA7	236 aa	Predicted RBP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	OTUB1	Q96FW1	271 aa	Predicted RBP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TMEM19	Q96HH6	336 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CNDP1	Q96KN2	507 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	SEPHS2	Q99611	448 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	CPNE1	Q99829	537 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	EGFL8	Q99944	293 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	FERMT1	Q9BQL6	677 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	LMF2	Q9BU23	707 aa	Known RBP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	KATNB1	Q9BVA0	655 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	TRIM7	Q9C029	511 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	GLT8D2	Q9H1C3	349 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	MRPL44	Q9H9J2	332 aa	Known RBP	4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442		Q9N2K0	584 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	DPP3	Q9NY33	737 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	PADI2	Q9Y2J8	665 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	4.07	□□□□□ -1.76	1e-7	■■■■■ 27.3
ECHDC1-223	ENST00000534442	FREM1	Q5H8C1	2179 aa		4.07	□□□□□ -1.76
ECHDC1-223	ENST00000534442	PLXNB1	O43157	2135 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms